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Sample GSM48526 Query DataSets for GSM48526
Status Public on Apr 21, 2005
Title R-2-C2-3
Sample type RNA
 
Channel 1
Source name cy3 Pool
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name cy5 Liver5
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).
 
Submission date Apr 19, 2005
Last update date May 27, 2005
Contact name Kenneth Lyon Phillips
E-mail(s) kphillips@icoria.com
Phone 919 425 3075
Organization name Paradigm Array Labs
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL922
Series (1)
GSE2458 Cross-platform comparability of microarray data

Data table header descriptions
ID_REF
X the X-coordinate in µm of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Y the Y-coordinate in µm of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Dia. the diameter in µm of the feature-indicator.
F635 Median median feature pixel intensity at wavelength 1 (635 nm).
F635 Mean mean feature pixel intensity at wavelength 1 (635 nm).
F635 SD the standard deviation of the feature pixel intensity at wavelength 1 (635 nm).
B635 Median the median feature background intensity at wavelength 1 (635 nm).
B635 Mean the mean feature background intensity at wavelength 1 (635 nm).
B635 SD
% > B635+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 1 (635 nm).
% > B635+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 1 (635 nm).
F635 % Sat. the percentage of feature pixels at wavelength 1 that are saturated.
F532 Median median feature pixel intensity at wavelength 2 (532 nm).
F532 Mean mean feature pixel intensity at wavelength 2 (532 nm).
F532 SD the standard deviation of the feature intensity at wavelength 2 (532 nm).
B532 Median the median feature background intensity at wavelength 2 (532 nm).
B532 Mean the mean feature background intensity at wavelength 2 (532 nm).
B532 SD the standard deviation of the feature background intensity at wavelength 2 (532 nm).
% > B532+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 2 (532 nm).
% > B532+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 2 (532 nm).
F532 % Sat. the percentage of feature pixels at wavelength 2 that are saturated.
Ratio of Medians
Ratio of Means
Median of Ratios
Mean of Ratios
Ratios SD
Rgn Ratio
Rgn R²
F Pixels the total number of feature pixels.
B Pixels the total number of background pixels.
Sum of Medians the sum of the median intensities for each wavelength, with the median background subtracted.
Sum of Means the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
VALUE log (base 2) transform of the ratio of the medians.
F635 Median - B635 the median feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Median - B532 the median feature pixel intensity at wavelength 2 with the median background subtracted.
F635 Mean - B635 the mean feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Mean - B532 the mean feature pixel intensity at wavelength 2 with the median background subtracted.
Flags the type of flag associated with a feature.

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R² F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
22575 1090 13150 110 680 722 286 50 55 24 100 100 0 3993 4026 425 46 49 27 100 100 0 0.160 0.169 0.162 0.156 1.460 0.182 0.841 80 589 4577 4652 -2.647 630 3947 672 3980 0
22360 1280 13150 110 508 590 295 50 56 26 100 100 0 5009 4972 392 46 50 33 100 100 0 0.092 0.110 0.096 0.098 1.602 0.113 0.726 80 579 5421 5466 -3.438 458 4963 540 4926 0
22145 1470 13150 110 60 66 27 50 55 24 40 11 0 101 104 27 46 50 33 82 40 0 0.182 0.276 0.516 0.426 2.729 1.274 0.245 80 562 65 74 -2.459 10 55 16 58 0
21930 1660 13160 120 474 506 359 51 56 23 92 87 0 431 458 308 47 49 12 90 86 0 1.102 1.107 1.099 1.193 1.825 1.148 0.858 120 650 807 866 0.140 423 384 455 411 0
21715 1860 13150 120 174 207 196 50 55 24 88 80 0 178 194 149 47 48 12 89 86 0 0.947 1.068 1.018 1.069 2.193 1.220 0.834 120 647 255 304 -0.079 124 131 157 147 0
21500 2040 13150 110 311 353 170 50 56 23 100 100 0 301 318 129 47 47 11 100 100 0 1.028 1.118 1.166 1.066 1.648 1.316 0.765 80 524 515 574 0.039 261 254 303 271 0
21285 2220 13150 110 129 170 237 49 55 25 87 67 0 169 194 152 47 48 12 100 100 0 0.656 0.823 0.730 0.602 2.212 1.445 0.703 80 549 202 268 -0.609 80 122 121 147 0
21070 2410 13150 120 155 167 85 50 55 25 86 77 0 179 183 80 47 48 12 91 90 0 0.795 0.860 0.899 0.831 2.047 0.911 0.672 120 629 237 253 -0.330 105 132 117 136 0
20855 2600 13150 120 1767 1924 1291 52 54 22 98 97 0 1438 1561 1091 46 47 11 98 95 0 1.232 1.236 1.239 1.317 1.543 1.199 0.971 120 609 3107 3387 0.301 1715 1392 1872 1515 0
20640 2790 13150 120 372 499 450 49 53 20 94 90 0 411 465 299 46 47 11 94 92 0 0.885 1.074 0.938 1.008 1.793 1.258 0.805 120 609 688 869 -0.176 323 365 450 419 0
20425 2980 13150 120 91 110 129 48 53 23 69 41 0 125 134 105 47 47 10 90 90 0 0.551 0.713 0.696 0.586 3.274 1.087 0.637 120 626 121 149 -0.859 43 78 62 87 0
20210 3170 13150 120 269 314 187 50 54 22 94 93 0 203 212 103 46 48 30 90 87 0 1.395 1.590 1.529 1.547 1.861 1.718 0.743 120 608 376 430 0.480 219 157 264 166 0
19995 3360 13150 120 286 353 220 49 53 23 91 90 0 292 316 173 45 48 30 88 85 0 0.960 1.122 1.135 1.057 1.955 1.193 0.790 120 610 484 575 -0.060 237 247 304 271 0
19780 3540 13150 120 768 793 408 51 55 22 93 91 0 751 728 349 46 47 11 91 90 0 1.017 1.088 1.117 1.187 1.676 1.101 0.903 120 630 1422 1424 0.024 717 705 742 682 0
19565 3730 13150 110 89 96 42 51 55 23 58 45 0 116 122 42 46 47 11 98 97 0 0.543 0.592 0.629 0.511 2.917 0.728 0.263 80 532 108 121 -0.881 38 70 45 76 0
19350 3920 13150 120 223 228 121 49 55 23 90 85 0 291 283 138 46 47 11 89 89 0 0.710 0.755 0.696 0.730 1.764 0.777 0.719 120 626 419 416 -0.494 174 245 179 237 0
19135 4090 13150 110 146 164 88 51 56 27 88 75 0 183 190 47 46 49 27 100 97 0 0.693 0.785 0.729 0.664 2.127 1.054 0.559 80 531 232 257 -0.528 95 137 113 144 0
18920 4290 13150 120 176 237 250 50 56 27 93 84 0 212 228 145 47 49 20 90 89 0 0.764 1.033 0.959 0.922 2.235 1.392 0.759 120 643 291 368 -0.389 126 165 187 181 0
18705 4480 13150 120 296 355 322 51 56 23 95 91 0 326 354 280 47 48 11 95 93 0 0.878 0.990 0.963 0.940 1.732 0.991 0.974 120 626 524 611 -0.187 245 279 304 307 0
18490 4670 13150 120 178 218 263 49 54 22 91 85 0 217 256 217 47 49 12 93 92 0 0.759 0.809 0.738 0.704 2.390 1.054 0.841 120 647 299 378 -0.398 129 170 169 209 0

Total number of rows: 22575

Table truncated, full table size 3567 Kbytes.




Supplementary data files not provided

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