Has 8297 entries and was indexed 29-Jan-2002. The sequences used to develop this array were obtained from GenBank in collaboration with Novartis Agriculture Discovery Institute, Inc. Probes were synthesized in situ. Eighty percent of the genes represented are predicted coding sequences from genomic BAC entries. Twenty percent are high quality cDNA sequences. Also contains >100 EST clusters, sharing homology with predicted coding sequences from BAC clones.
Expression profile of Arabidopsis thaliana seedlings subjected to hypoxia
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
Sequence Type: Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
0009507 // chloroplast // inferred from electronic annotation
0005515 // protein binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // inferred from sequence or structural similarity
0008152 // metabolic process // inferred from sequence or structural similarity /// 0008152 // metabolic process // inferred from electronic annotation
0009507 // chloroplast // inferred from direct assay
0008080 // N-acetyltransferase activity // inferred from sequence or structural similarity /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation
AF069442 /FEATURE=cds-18 /GENE=T4I9.18 /LABEL= /PRODUCT= hypothetical protein /STRAND=forward /DEFINITION=Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete sequence.
0030001 // metal ion transport // inferred from electronic annotation
0046872 // metal ion binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation
Less...
More...