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Sample GSM105804 Query DataSets for GSM105804
Status Public on May 17, 2006
Title x38-2B
Sample type RNA
 
Source name seedling
Organism Arabidopsis thaliana
Characteristics Strain: MR38-2B
Background: Col
Time (days): 21.0
Extracted molecule total RNA
Label biotin
Label protocol biotin cRNA
 
Description none
Data processing MAS5.0
 
Submission date Apr 18, 2006
Last update date Apr 19, 2006
Contact name Matthew Wayne Vaughn
E-mail(s) vaughn@tacc.utexas.edu
Phone (512) 232-7124
Organization name University of Texas at Austin
Department Texas Advanced Computing Center
Lab Vaughn
Street address 10100 Burnet Rd
City Austin
State/province TX
ZIP/Postal code 78758
Country USA
 
Platform ID GPL71
Series (1)
GSE4684 miRNA-Targeted and siRNA-Mediated mRNA Degradation Regulated by Argonaute, Dicer and RdRP

Data table header descriptions
ID_REF
VALUE MAS5.0
Control Value median of a user specified list of positive control genes
Normalized Value For samples where the bottom tenth percentile was less than the negative of the median of the positive control genes, the bottom tenth percentile was used as a background, and subtracted from all the other genes first. User specified genes were used as negative controls for a background subtraction; their median value was subtracted from the raw values for each gene. Values below 0.01 were set to 0.01.
ABS_CALL

Data table
ID_REF VALUE Control Value Normalized Value ABS_CALL
11986_at 101.4 98.65 1.003 P
11987_at 160 98.65 1.597 P
11988_at 48.5 98.65 0.466 P
11989_at 22.1 98.65 0.199 A
11990_at 52.1 98.65 0.503 P
11991_g_at 74.7 98.65 0.732 P
11992_at 81.6 98.65 0.802 P
11993_at 5.3 98.65 0.0284 A
11994_at 222.7 98.65 2.232 P
11995_at 38 98.65 0.36 P
11996_at 215.5 98.65 2.159 P
11997_at 61.3 98.65 0.596 P
11998_at 63.2 98.65 0.615 P
11999_at 9.1 98.65 0.0669 A
12000_at 18.8 98.65 0.165 P
12001_at 103.4 98.65 1.023 P
12002_at 69.2 98.65 0.676 P
12003_at 9 98.65 0.0659 A
12004_at 92.8 98.65 0.915 P
12005_at 14.7 98.65 0.124 P

Total number of rows: 8247

Table truncated, full table size 226 Kbytes.




Supplementary data files not provided
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