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Sample GSM105813 Query DataSets for GSM105813
Status Public on May 17, 2006
Title x49-2A
Sample type RNA
 
Source name seedling
Organism Arabidopsis thaliana
Characteristics Strain: MR49-2A
Background: ago1-10
Time (days): 35.0
Extracted molecule total RNA
Label biotin
Label protocol biotin cRNA
 
Description none
Data processing MAS5.0
 
Submission date Apr 18, 2006
Last update date Apr 19, 2006
Contact name Matthew Wayne Vaughn
E-mail(s) vaughn@tacc.utexas.edu
Phone (512) 232-7124
Organization name University of Texas at Austin
Department Texas Advanced Computing Center
Lab Vaughn
Street address 10100 Burnet Rd
City Austin
State/province TX
ZIP/Postal code 78758
Country USA
 
Platform ID GPL71
Series (1)
GSE4684 miRNA-Targeted and siRNA-Mediated mRNA Degradation Regulated by Argonaute, Dicer and RdRP

Data table header descriptions
ID_REF
VALUE MAS5.0
Control Value median of a user specified list of positive control genes
Normalized Value For samples where the bottom tenth percentile was less than the negative of the median of the positive control genes, the bottom tenth percentile was used as a background, and subtracted from all the other genes first. User specified genes were used as negative controls for a background subtraction; their median value was subtracted from the raw values for each gene. Values below 0.01 were set to 0.01.
ABS_CALL

Data table
ID_REF VALUE Control Value Normalized Value ABS_CALL
11986_at 53.4 57.8 0.86 P
11987_at 78.5 57.8 1.294 P
11988_at 27.9 57.8 0.419 P
11989_at 14.7 57.8 0.19 A
11990_at 11.8 57.8 0.14 P
11991_g_at 27.1 57.8 0.405 P
11992_at 35.3 57.8 0.547 P
11993_at 0.9 57.8 0.01 A
11994_at 61.1 57.8 0.993 P
11995_at 24.8 57.8 0.365 P
11996_at 130.1 57.8 2.187 P
11997_at 24.2 57.8 0.355 P
11998_at 23.8 57.8 0.348 P
11999_at 10.7 57.8 0.121 A
12000_at 17.7 57.8 0.242 P
12001_at 59 57.8 0.957 P
12002_at 63 57.8 1.026 M
12003_at 13.5 57.8 0.17 A
12004_at 68.2 57.8 1.116 P
12005_at 13.5 57.8 0.17 P

Total number of rows: 8247

Table truncated, full table size 216 Kbytes.




Supplementary data files not provided

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