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Status
Public on Nov 21, 2007
Title
Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2519F
Description
Submission date
Nov 21, 2007
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (194)
GSM241585 , GSM241586 , GSM268039 , GSM269646 , GSM361970 , GSM361971
GSM361972 ,
GSM361973 ,
GSM361974 ,
GSM361975 ,
GSM364178 ,
GSM364179 ,
GSM364180 ,
GSM364181 ,
GSM364182 ,
GSM364183 ,
GSM366982 ,
GSM366983 ,
GSM366992 ,
GSM366993 ,
GSM366994 ,
GSM366995 ,
GSM366996 ,
GSM366997 ,
GSM366998 ,
GSM366999 ,
GSM413786 ,
GSM413787 ,
GSM413788 ,
GSM413789 ,
GSM425803 ,
GSM425804 ,
GSM425805 ,
GSM425806 ,
GSM425807 ,
GSM425808 ,
GSM425809 ,
GSM425810 ,
GSM425811 ,
GSM425812 ,
GSM425813 ,
GSM425814 ,
GSM425815 ,
GSM425816 ,
GSM425817 ,
GSM425818 ,
GSM425819 ,
GSM425820 ,
GSM425821 ,
GSM425822 ,
GSM425823 ,
GSM425824 ,
GSM425825 ,
GSM425826 ,
GSM425827 ,
GSM425828 ,
GSM425829 ,
GSM460129 ,
GSM460130 ,
GSM460131 ,
GSM460132 ,
GSM460133 ,
GSM460134 ,
GSM460135 ,
GSM460136 ,
GSM460137 ,
GSM460138 ,
GSM460139 ,
GSM460140 ,
GSM460141 ,
GSM460142 ,
GSM460143 ,
GSM460144 ,
GSM460145 ,
GSM460146 ,
GSM460147 ,
GSM460148 ,
GSM460149 ,
GSM460150 ,
GSM460151 ,
GSM460152 ,
GSM460153 ,
GSM460154 ,
GSM460155 ,
GSM460156 ,
GSM460157 ,
GSM460158 ,
GSM460159 ,
GSM460160 ,
GSM460161 ,
GSM460162 ,
GSM460163 ,
GSM460164 ,
GSM460165 ,
GSM460166 ,
GSM460167 ,
GSM460168 ,
GSM460169 ,
GSM460170 ,
GSM460171 ,
GSM460172 ,
GSM460173 ,
GSM460174 ,
GSM460175 ,
GSM460176 ,
GSM502538 ,
GSM502539 ,
GSM502540 ,
GSM502541 ,
GSM502542 ,
GSM502543 ,
GSM502544 ,
GSM502545 ,
GSM502546 ,
GSM502547 ,
GSM502548 ,
GSM502549 ,
GSM502550 ,
GSM502551 ,
GSM502552 ,
GSM502553 ,
GSM502554 ,
GSM502555 ,
GSM502556 ,
GSM502557 ,
GSM602675 ,
GSM602676 ,
GSM602677 ,
GSM602678 ,
GSM612228 ,
GSM612229 ,
GSM612230 ,
GSM612231 ,
GSM612232 ,
GSM612233 ,
GSM612234 ,
GSM612235 ,
GSM612236 ,
GSM612237 ,
GSM646169 ,
GSM646170 ,
GSM646171 ,
GSM736640 ,
GSM736641 ,
GSM736642 ,
GSM736643 ,
GSM736644 ,
GSM736645 ,
GSM736646 ,
GSM736647 ,
GSM769989 ,
GSM769990 ,
GSM769991 ,
GSM769992 ,
GSM1005117 ,
GSM1005118 ,
GSM1005119 ,
GSM1005120 ,
GSM1005121 ,
GSM1005122 ,
GSM1005123 ,
GSM1005124 ,
GSM1005125 ,
GSM1005126 ,
GSM1005127 ,
GSM1005128 ,
GSM1088734 ,
GSM1088735 ,
GSM1088736 ,
GSM1088737 ,
GSM1088738 ,
GSM1088739 ,
GSM1088740 ,
GSM1088741 ,
GSM1267400 ,
GSM1267401 ,
GSM1665742 ,
GSM1665743 ,
GSM1665744 ,
GSM1700867 ,
GSM2700769 ,
GSM2700770 ,
GSM2700771 ,
GSM2700772 ,
GSM2700782 ,
GSM2700783 ,
GSM4504464 ,
GSM4504465 ,
GSM4504466 ,
GSM4504467 ,
GSM4504468 ,
GSM4504469 ,
GSM4504470 ,
GSM4504471 Series (29)
GSE9543 Arabidopsis thaliana open flowers: Wild type vs. sdg4 mutant (SALK T-DNA line_128444)
GSE10638 Comparison of the transcriptomes of hmgb1 vs Col-0
GSE10663 Comparison of the transcriptomes of tfIIs vs Col-0
GSE14492 Arabidopsis gene expression profile : Col-0 wild-type vs. pif3pif4pil5pil6 (pifQ) mutant
GSE14564 Comparison of expression in PAM765-transgenic vs GUS-transgenic Arabidopsis
GSE14702 Functional analysis of HSFB transcription factors [22°C]
GSE16460 Arabidopsis thaliana root tip: ago1-101, scr-3 and Col-0
GSE17022 Profiling of caf1a and caf1b mutants
GSE18482 Arabidopsis thaliana tetraploid transcriptome
GSE20109 Root transcriptome remodeling of Arabidopsis in response to high levels of magnesium sulfate
GSE24464 Expression analysis of meristematic tissue (Me) and young leaves (Le) isolated by manual dissection of clv3-9 plants
GSE24507 Gene expression and H3K27 tri-methylation analysis of meristematic tissue (Me) and young leaves (Le) isolated by manual dissection of clv3-9 plants
GSE24895 ENF1 (enlarged fil expression domain1) vs wild-type Col.
GSE26314 Regulation of cold-induced gene expression by HY5
GSE29693 Comparison of SND2-overexpressing and wild type Arabidopsis thaliana Col-0 inflorescence stems
GSE31100 Expression pattern in HaHB1 overexpressor plants under normal growth conditions
GSE31888 Functional analysis of Arabidopsis HSFB transcription factor
GSE40922 Arabidopsis thaliana wild type control (C) vs Pseudomonas syringae infected (Pseu)
GSE40923 Arabidopsis thaliana wild type mechanical damage (MD) vs herbivore wounding (HW)
GSE40924 Arabidopsis thaliana wild type mechanical damage (MD) vs Myzus persicae wounding (Myz)
GSE40926 Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis
GSE44676 Single cell transcriptome analysis of Arabidopsis roots inoculated by Plasmodiophora brassicae indicates a role for brassinosteroids in clubroot formation.
GSE52468 Changes in translational state from 1 day to 8 day after inoculation in Arabidopsis thaliana T87 cells
GSE68205 Transcriptomic analysis of Arabidopsis stigmatic papilla cells
GSE69411 Arabidopsis Forever Young Flower (FYF): 35S::FYF+GR
GSE101293 Arabidopsis inflorescence stems: wild type vs eal1
GSE101296 Arabidopsis inflorescence stems: wild type vs sgr1
GSE101298 Arabidopsis inflorescence stems: wild type vs eal1 and sgr1
GSE149526 Expression analysis using 4 x 44K micro array in Arabidopsis
Relations Alternative to
GPL7299
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
UNIGENE_ID UnigeneID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC UNIGENE_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
CHR2:019408191-019408250
A_84_P713200
FALSE
chr2:019408191-019408250
CATACACACAGACTTATTTCCGTAAATTCAAGTGAAGTGAAACATAGTACGCTCAAGTAA
13
266
146
At2g32160.2
A_84_P286420
FALSE
NM_128775
NM_128775 At.13607
NP454601
tair|At2g32160.2|ref|NM_128775|tc|NP454601|tc|TC253987
chr2:13672881-13673050
expressed protein [At2g32160.2]
GO:0008372(cellular_component unknown)|GO:0005554(molecular_function unknown)
TTTGAGATGGAGAAAGAAAAAACAATAGAAACAACGTACTCTACAAACCCCCGGTCTATG
14
266
144
CHR5:007276699-007276758
A_84_P737471
FALSE
chr5:007276699-007276758
TTTTTATATATAGAGAAAAAAAATAAAGATCTCTATAATAGAGGTAAGAATAAAGATGAG
15
266
142
At4g33420.1
A_84_P11987
FALSE
NM_119496
AK176812 At.28650
TC265127
tair|At4g33420.1|ref|NM_119496|tc|TC265127|gb|AK176812
chr4:16086029-16086088
peroxidase, putative identical to class III peroxidase ATP32 [Arabidopsis thaliana] gi|17530547|gb|AAL40837; identical to cDNA class III peroxidase ATP32 GI:17530546 [At4g33420.1]
GO:0006979(response to oxidative stress)|GO:0004601(peroxidase activity)|GO:0005739(mitochondrion)
CCATGCGCAAGATGAGCAATCTTGATGTTAAACTTGGCTCTCAAGGTGAAGTCCGTCAAA
16
266
140
CHR4:008348949-008349008
A_84_P727204
FALSE
chr4:008348949-008349008
GTTTAGAGAATAATTTTGGTCATAATAATGAAAGCAAGAAGAATGAGGAAACTCACGGCC
17
266
138
At3g14140.1
A_84_P254260
FALSE
NM_112270
NP227033
tair|At3g14140.1|ref|NM_112270|tc|NP227033
chr3:4690009-4690213
oxidoreductase, 2OG-Fe(II) oxygenase family protein low similarity to alkB protein [Escherichia coli][SP|P05050], alkB [Caulobacter crescentus][GI:2055386]; contains Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily [At3g14140.1]
GO:0008372(cellular_component unknown)|GO:0006281(DNA repair)|GO:0005554(molecular_function unknown)
CATCAGGACAAAGGGGAGAGCAAAAAGTCCCTCCGGAAAGGATTGCCTATTGTATCATTT
18
266
136
At4g24530.1
A_84_P14782
FALSE
NM_118586
NM_118586 At.32337
TC265564
tair|At4g24530.1|ref|NM_118586|tc|TC265564
chr4:12667494-12667435
expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'PsRT17-1 like protein' based on similarity to PsRT17-1 (GP:1778376) [Pisum sativum] which was based upon...
GO:0005554(molecular_function unknown)|GO:0005739(mitochondrion)
CAAACAGAAACAGTCTATTTACACTTATCCAGCTCCTGATTGCATGTGTAAAGTAGCTTA
19
266
134
At5g35370.1
A_84_P14944
FALSE
NM_122928
NM_122928 At.22848
TC278803
tair|At5g35370.1|ref|NM_122928|tc|TC278803|tc|TC255155
chr5:13605964-13605905
lectin protein kinase family protein contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain [At5g35370.1]
GO:0004674(protein serine/threonine kinase activity)|GO:0006468(protein amino acid phosphorylation)|GO:0016301(kinase activity)|GO:0005529(sugar binding)|GO:0004672(protein kinase activity)|GO:0005524(ATP binding)|GO:0012505(endomembrane system)|GO:0030246(carbohydrate binding)
TTGAACTTCTTGAGGTTTTATGGGCTGAGGTTTGCGGAGTCTTCCATGGTTGAAGGACAA
20
266
132
At2g46760.1
A_84_P582022
FALSE
NM_130242
TC269420
tair|At2g46760.1|ref|NM_130242|tc|TC269420
chr2:19220161-19220102
FAD-binding domain-containing protein strong similarity to At1g32300, At2g46740, At2g46750, At5g56490; contains PF01565: FAD binding domain [At2g46760.1]
GO:0003885(D-arabinono-1,4-lactone oxidase activity)|GO:0006118(electron transport)|GO:0012505(endomembrane system)|GO:0016020(membrane)|GO:0009058(biosynthesis)|GO:0016899(oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor)
CAAAGAAGCTAGGGTATGTACACGTGCTGATGACATAAGTGTGATTCAATCACTAAGTTA
45220 14797 Kbytes .Supplementary file Size Download File type/resource GPL6177_old_annotations.txt.gz
4.4 Mb
(ftp) (http) TXT
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