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Status
Public on Oct 08, 2008
Title
Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Arabidopsis thaliana Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2519F
Description
Submission date
Sep 12, 2008
Last update date
Apr 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (213)
GSM460661 , GSM460662 , GSM460663 , GSM460664 , GSM460665 , GSM460666
GSM460667 ,
GSM460668 ,
GSM497282 ,
GSM497283 ,
GSM497284 ,
GSM497285 ,
GSM497286 ,
GSM497287 ,
GSM519676 ,
GSM519677 ,
GSM519678 ,
GSM519679 ,
GSM519680 ,
GSM519681 ,
GSM519682 ,
GSM539886 ,
GSM539887 ,
GSM539888 ,
GSM539889 ,
GSM539890 ,
GSM539891 ,
GSM539892 ,
GSM539893 ,
GSM539894 ,
GSM539895 ,
GSM539896 ,
GSM539897 ,
GSM609374 ,
GSM609375 ,
GSM609376 ,
GSM609377 ,
GSM609378 ,
GSM609379 ,
GSM609380 ,
GSM609381 ,
GSM790577 ,
GSM790578 ,
GSM790579 ,
GSM790580 ,
GSM790581 ,
GSM790582 ,
GSM790583 ,
GSM790584 ,
GSM790585 ,
GSM790586 ,
GSM790587 ,
GSM790588 ,
GSM790589 ,
GSM790590 ,
GSM790591 ,
GSM790592 ,
GSM790593 ,
GSM790594 ,
GSM790595 ,
GSM790596 ,
GSM790597 ,
GSM790598 ,
GSM790599 ,
GSM790600 ,
GSM851757 ,
GSM851758 ,
GSM851759 ,
GSM851760 ,
GSM851761 ,
GSM851762 ,
GSM851763 ,
GSM851764 ,
GSM851765 ,
GSM861981 ,
GSM861982 ,
GSM861983 ,
GSM870215 ,
GSM870216 ,
GSM870217 ,
GSM870218 ,
GSM1008032 ,
GSM1008033 ,
GSM1008034 ,
GSM1008035 ,
GSM1044791 ,
GSM1044792 ,
GSM1044793 ,
GSM1044794 ,
GSM1044795 ,
GSM1044796 ,
GSM1044797 ,
GSM1044798 ,
GSM1044799 ,
GSM1044800 ,
GSM1044801 ,
GSM1044802 ,
GSM1059954 ,
GSM1059955 ,
GSM1059956 ,
GSM1095887 ,
GSM1095888 ,
GSM1095889 ,
GSM1095890 ,
GSM1095891 ,
GSM1095892 ,
GSM1129209 ,
GSM1129210 ,
GSM1129211 ,
GSM1129212 ,
GSM1129213 ,
GSM1129214 ,
GSM1129215 ,
GSM1129216 ,
GSM1129217 ,
GSM1129218 ,
GSM1129219 ,
GSM1129220 ,
GSM1129221 ,
GSM1129222 ,
GSM1129223 ,
GSM1129224 ,
GSM1129225 ,
GSM1129226 ,
GSM1129227 ,
GSM1129228 ,
GSM1129229 ,
GSM1129230 ,
GSM1129231 ,
GSM1129232 ,
GSM1129233 ,
GSM1129234 ,
GSM1129235 ,
GSM1129236 ,
GSM1129237 ,
GSM1129238 ,
GSM1185250 ,
GSM1185251 ,
GSM1185252 ,
GSM1185253 ,
GSM1185254 ,
GSM1185255 ,
GSM1185256 ,
GSM1185257 ,
GSM1207169 ,
GSM1207170 ,
GSM1207171 ,
GSM1207172 ,
GSM1207173 ,
GSM1207174 ,
GSM1207175 ,
GSM1207176 ,
GSM1207177 ,
GSM1207178 ,
GSM1207179 ,
GSM1207180 ,
GSM1207181 ,
GSM1207182 ,
GSM1207183 ,
GSM1248921 ,
GSM1248922 ,
GSM1248923 ,
GSM1248924 ,
GSM1248925 ,
GSM1248926 ,
GSM1248927 ,
GSM1248928 ,
GSM1254184 ,
GSM1254185 ,
GSM1254186 ,
GSM1254187 ,
GSM1254188 ,
GSM1254189 ,
GSM1896031 ,
GSM1896032 ,
GSM1896033 ,
GSM1896034 ,
GSM1896035 ,
GSM1896036 ,
GSM1896037 ,
GSM1896038 ,
GSM2443445 ,
GSM2443446 ,
GSM2443447 ,
GSM2443448 ,
GSM2443449 ,
GSM2443450 ,
GSM2443451 ,
GSM2443452 ,
GSM2740167 ,
GSM2740168 ,
GSM2740169 ,
GSM2740170 ,
GSM2740171 ,
GSM2740172 ,
GSM2740173 ,
GSM2740174 ,
GSM2740175 ,
GSM2740176 ,
GSM2740177 ,
GSM2740178 ,
GSM2912926 ,
GSM2912927 ,
GSM2912928 ,
GSM2912929 ,
GSM2912930 ,
GSM2912931 ,
GSM2912932 ,
GSM2912933 ,
GSM2912934 ,
GSM2912935 ,
GSM2912936 ,
GSM2912937 Series (27)
GSE18492 Transcriptome of ang3 mutant shoot apices
GSE18493 Transcriptome analysis of the ron3 mutant
GSE19893 Gene expression profiling of 35S:AtMYB102-SRDXplant under salt stress treatment
GSE20705 Cuc1 mutants expressing the chimeric repressor TCP3-SRDX
GSE21631 Comparison of Arabidopsis callus
GSE24741 Transcriptomic analysis of the voz1 voz2 double mutant
GSE31883 Functional analysis of HSFB transcription factors [32°C]
GSE31884 Transcriptomes of 35S:MYB106SRDX, 35S:WIN1SRDX and wild-type Arabidopsis seedling
GSE31885 Transcriptomes of 35S:WIN1 and vector-control Arabidopsis seedling
GSE31887 Functional analysis of Arabidopsis MYB106 and WIN1/SHN1 transcription factors
GSE31888 Functional analysis of Arabidopsis HSFB transcription factor
GSE34606 Gene expression profiles in Arabidopsis plants during the treatment of AgNO3.
GSE35098 35S:AtIBH1-SRDX Arabidopsis vs. wild type
GSE35526 Gene expression in response to chloroplastic H2O2: IS-GUS-2-17 vs. IS-tAPX-19-23 under estrogen treatment
GSE41053 A gene regulatory network involving the class II ERF transcriptional repressors in leaf senescence of Arabidopsis thaliana
GSE42545 Chimeric repressors of GLKs confer tolerance to air pollutant by closing stomata in Arabidopsis
GSE43282 Assessing global transcriptomic changes in response to South African cassava mosaic virus [ZA-99] infection in susceptible Arabidopsis thaliana
GSE45017 STOP2 activated transcription in the stop1-mutant: STOP2-complemented lines (stop1-mutant with transformed STOP2) vs. stop1-mutant of Arabidopsis
GSE46365 Expression data in Arabidopsis hda6 mutant axe1-5 and its parental line DR5 under drought and control conditions
GSE48821 Target specificity amongst canonical nuclear poly(A) polymerases in plants modulates organ growth and pathogen response
GSE49796 Expression data in Arabidopsis Col-0 with cold acclimation (CA) treatment and subsequent cold deacclimation (DA) treatment.
GSE51595 MYB87 chimera repressor suppresses longitudinal organ growth with aberrant expressions of cell wall related genes in Arabidopsis thaliana
GSE51859 Regulation of cold-inducible gene expression by RCI1A
GSE73497 Arabidopsis thaliana wild-type vs. cotyledon-less laterne (= pid enp homozygous) mutant
GSE93079 Global gene expression analysis of NMN-induced disease resistance in Arabidopsis thaliana.
GSE102528 Arabidopsis buds: dyt1 vs Col; tdf1 vs Col; ams vs Col; ms188 vs Col
GSE108751 Transcriptomic response to mild rhizotoxic ion stresses: Comparison of gene expression responses to mild concentration of rhizotoxic ions (Al, Cu, Cd and NaCl) in Arabidopsis roots.
Relations Alternative to
GPL6177
Data table header descriptions ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE A_84_P10000
A_84_P10000
FALSE
tc|TC375586
chr4:2041126-2040951
CTACATTGGTACAAAGACTTATTCCCGGAGGAGATTCCACCCGGACTACCACCTATTCAC
A_84_P10001
A_84_P10001
FALSE
NM_102184 NM_102184 838944 AT1G23350
invertase/pectin methylesterase inhibitor family protein
At.41554
ref|NM_102184|gb|AK175880|ta|TA46278_3702|ta|CD533988
chr1:8293784-8293725
Arabidopsis thaliana invertase/pectin methylesterase inhibitor family protein (AT1G23350) mRNA, complete cds [NM_102184]
GO:0004857(enzyme inhibitor activity)|GO:0008150(biological_process)|GO:0030599(pectinesterase activity)|GO:0046910(pectinesterase inhibitor activity)
AGGAGGTCAACGTCATTTATAAATCCGCCGGGGTTTTGTACCGTATGGCTGATAATTGCT
A_84_P10002
A_84_P10002
FALSE
NM_116719 NM_116719 825818 AT4G04810
methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein
At.33960
ref|NM_116719|tc|NP13350399|ta|N97075|tc|TC392188
chr4:2442153-2442212
Arabidopsis thaliana methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein (AT4G04810) mRNA, complete cds [NM_116719]
GO:0005829(cytosol)|GO:0008113(peptide-methionine-(S)-S-oxide reductase activity)|GO:0055114(oxidation-reduction process)
GGGAACAGAAGAATATGACAAGTTCTTTGAGGAAGGAATCTTCAGCTGCATCGGATGCAA
A_84_P10003
A_84_P10003
FALSE
NM_116748 NM_116748 825853 AT4G05090
inositol monophosphatase family protein
At.33920
ref|NM_116748|gb|AK175301|ta|TA43475_3702|ta|CNS0A2VL
chr4:2611532-2611591
Arabidopsis thaliana inositol monophosphatase family protein (AT4G05090) mRNA, complete cds [NM_116748]
GO:0004437(inositol or phosphatidylinositol phosphatase activity)|GO:0006790(sulfur compound metabolic process)|GO:0008441(3'(2'),5'-bisphosphate nucleotidase activity)|GO:0009507(chloroplast)
AGGCTCATTTTTCCGGCGGGCGGTGTTGTAGTAAGCAACGGAAGTTTACATAATCAGATT
A_84_P10004
A_84_P10004
FALSE
NM_116765 NM_116765 825874 AT4G05260
ubiquitin family protein
At.54160
ref|NM_116765|tc|TC379214
chr4:2694314-2694373
Arabidopsis thaliana ubiquitin family protein (AT4G05260) mRNA, complete cds [NM_116765]
GO:0003674(molecular_function)|GO:0005575(cellular_component)
TAAGGGATCATTTAGATCGGCCTCAAGATGGTGATTATTTCTTCGTACACAAAGGGAGAG
A_84_P10005
A_84_P10005
FALSE
NM_116785 NM_116785 825896 AT4G05460
F-box family protein (FBL20)
At.48830
ref|NM_116785|ta|TA33636_3702|tc|TC402443
chr4:2761188-2761129
Arabidopsis thaliana F-box family protein (FBL20) (AT4G05460) mRNA, complete cds [NM_116785]
GO:0004842(ubiquitin-protein ligase activity)|GO:0006511(ubiquitin-dependent protein catabolic process)
TGTCAGGTGATGATGATTTTGAGGGTTACTATGACTTCTCAGGTGCTAGTGACTTTTCTG
A_84_P100056
A_84_P100056
FALSE
NM_001036470 NM_001036470 819207 AT2G45990
hypothetical protein
At.24763
ref|NM_001036470|ref|NM_130162|ref|NM_001036469|ref|NM_180112
chr2:18921065-18921124
Arabidopsis thaliana unknown protein (AT2G45990) mRNA, complete cds [NM_001036470]
GO:0003674(molecular_function)|GO:0008150(biological_process)|GO:0009507(chloroplast)|GO:0009570(chloroplast stroma)
GAAACAAAGCTTTCCTCTTTATTGTATTCTACGGCATTCAACGGAAACTAAAAACCAAAC
A_84_P10006
A_84_P10006
FALSE
tc|TC369305
chr4:4840756-4840815
GTCGAGACATTGAAGAGAAAGATGACGGAGTTCCTCACACAGCTTCCCCAAAATGATGAT
A_84_P10007
A_84_P10007
FALSE
NM_001036517 NM_001036517 826386 AT4G08320
tetratricopeptide repeat (TPR)-containing protein
At.71009
ref|NM_001036517|ref|NM_116901|ta|TA37752_3702|ta|TA37751_3702
chr4:5254912-5254971
Arabidopsis thaliana tetratricopeptide repeat (TPR)-containing protein (AT4G08320) mRNA, complete cds [NM_001036517]
GO:0005488(binding)|GO:0008150(biological_process)
TGGAGGATCAATGGGAGGCACTGGTAACAATAATCCTCAAGATTCTAATGGTGCACAAGG
A_84_P10008
A_84_P10008
FALSE
NM_001084888 NM_001084888 826420 ORTHL
ORTHL (ORTHRUS-LIKE); ubiquitin-protein ligase/ zinc ion binding
At.33741
ref|NM_001084888|ref|NM_116928|gb|AK175637|ta|TA47992_3702
chr4:5464194-5464135
Arabidopsis thaliana ORTHL (ORTHRUS-LIKE); ubiquitin-protein ligase/ zinc ion binding (ORTHL) mRNA, complete cds [NM_001084888]
GO:0004842(ubiquitin-protein ligase activity)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0016567(protein ubiquitination)
CACCTGCAAATCATGAGCAGAGGGAGAGAATGAAGATGGCTATGACATGTCTTCTCCTTT
A_84_P10009
A_84_P10009
FALSE
NM_116956 NM_116956 826458 AT4G08870
arginase, putative
At.4188
ref|NM_116956|ta|TA31938_3702|ta|CNS0A2DU|ta|BP660521
chr4:5646715-5646656
Arabidopsis thaliana arginase, putative (AT4G08870) mRNA, complete cds [NM_116956]
GO:0004053(arginase activity)|GO:0005739(mitochondrion)|GO:0006595(polyamine metabolic process)|GO:0008783(agmatinase activity)|GO:0009507(chloroplast)|GO:0050897(cobalt ion binding)
ACATGACGGCAATGGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAAT
A_84_P10010
A_84_P10010
FALSE
NM_116977 NM_116977 826486 TOC75-IV
TOC75-IV
At.50329
ref|NM_116977|ta|AY585655|ta|CNS0A4MU|tc|TC368053
chr4:5805979-5806038
Arabidopsis thaliana TOC75-IV (TOC75-IV) mRNA, complete cds [NM_116977]
GO:0009662(etioplast organization)|GO:0009707(chloroplast outer membrane)|GO:0031359(integral to chloroplast outer membrane)|GO:0045036(protein targeting to chloroplast)
ACATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGTATGGTGCGAGCTGAATATACTGT
A_84_P10011
A_84_P10011
FALSE
NM_117003 NM_117003 826517 AT4G09350
DNAJ heat shock N-terminal domain-containing protein
At.33701
ref|NM_117003|ta|TA48519_3702|ta|CNS0A4HK|ta|AK175888
chr4:5931444-5931385
Arabidopsis thaliana DNAJ heat shock N-terminal domain-containing protein (AT4G09350) mRNA, complete cds [NM_117003]
GO:0006457(protein folding)|GO:0009507(chloroplast)|GO:0031072(heat shock protein binding)
GGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAGCAATGACTGCTCTCACGTTCGATA
A_84_P10012
A_84_P10012
FALSE
NM_117028 NM_117028 826545 GASA3
GASA3 (GAST1 PROTEIN HOMOLOG 3)
At.24572
ref|NM_117028|gb|BX829024|ta|TA41557_3702|ta|T88426
chr4:6073474-6073314
Arabidopsis thaliana GASA3 (GAST1 PROTEIN HOMOLOG 3) (GASA3) mRNA, complete cds [NM_117028]
GO:0003674(molecular_function)|GO:0009739(response to gibberellin stimulus)|GO:0012505(endomembrane system)
TTCTGCCTCACCACTTTTGAGCTTCATGTTCATGCTGCTGAAGATTCACAAGTCGGTGAA
A_84_P10013
A_84_P10013
FALSE
NM_117062 NM_117062 826584 AT4G09940
avirulence-responsive family protein / avirulence induced gene (AIG1) family protein
At.54247
ref|NM_117062|ta|DQ056647|tc|TC371999
chr4:6233336-6233395
Arabidopsis thaliana avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (AT4G09940) mRNA, complete cds [NM_117062]
GO:0005525(GTP binding)|GO:0005774(vacuolar membrane)|GO:0009617(response to bacterium)
CAAGGATAAAACAAATGGCCACGGATCTTCAAAAATCCAAGCAGTGGTGCATCATTATGT
A_84_P10014
A_84_P10014
FALSE
NM_117084 NM_117084 826607 AT4G10160
zinc finger (C3HC4-type RING finger) family protein
At.33649
ref|NM_117084|ta|TA52759_3702|tc|TC381015
chr4:6336164-6336223
Arabidopsis thaliana zinc finger (C3HC4-type RING finger) family protein (AT4G10160) mRNA, complete cds [NM_117084]
GO:0004842(ubiquitin-protein ligase activity)|GO:0008270(zinc ion binding)
AATACCAACGTTGATTGGTCTTCTCTTGGTGGCTTCGTGCCCACCAACAATAATCTCTCA
A_84_P10015
A_84_P10015
FALSE
NM_117113 NM_117113 826637 AT4G10450
60S ribosomal protein L9 (RPL90D)
At.24000
ref|NM_117113|ta|TA28750_3702|ta|DR328274|ta|CA781984
chr4:6463939-6463880
Arabidopsis thaliana 60S ribosomal protein L9 (RPL90D) (AT4G10450) mRNA, complete cds [NM_117113]
GO:0003735(structural constituent of ribosome)|GO:0006412(translation)|GO:0015934(large ribosomal subunit)|GO:0019843(rRNA binding)|GO:0022625(cytosolic large ribosomal subunit)|GO:0022626(cytosolic ribosome)
GGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAGCTTGTTTCACGGTCTTGTGC
A_84_P100156
A_84_P100156
FALSE
NM_119776 NM_119776 829766 AT4G36100
hypothetical protein
At.19075
ref|NM_119776|tc|NP2705791
chr4:17083199-17083258
Arabidopsis thaliana unknown protein (AT4G36100) mRNA, complete cds [NM_119776]
GO:0005777(peroxisome)|GO:0006904(vesicle docking involved in exocytosis)|GO:0016192(vesicle-mediated transport)
GCTGAACGTTTCTTTAGCAGCAAACTCAGCCAGCAAAAGTCATATTGCTCTATGGCCAGT
A_84_P10016
A_84_P10016
FALSE
tc|TC368727
chr4:6585711-6585893
Rep: GTC2 (GLOBAL TRANSCRIPTION FACTOR GROUP C2) - Arabidopsis thaliana, complete [TC368727]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
GACTTGAAGAAAGATGTTCTTAGGGTTGACTCAGTTCCAACAAATGCTGGAGGATGGGAG
A_84_P10017
A_84_P10017
FALSE
NM_100509 NM_100509 837138 AT1G06270
pentatricopeptide (PPR) repeat-containing protein
At.28507
ref|NM_100509|ta|TA41897_3702|tc|TC367895
chr1:1918325-1918266
Arabidopsis thaliana pentatricopeptide (PPR) repeat-containing protein (AT1G06270) mRNA, complete cds [NM_100509]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
AAAGTGGTTGAGCGTCTGATTAACATCGGTGAATGGAAGCTTGCTTGTACTGTTAGACAA
37553 14434 Kbytes .Supplementary data files not provided
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