GEO help: Mouse over screen elements for information.
Status
Public on Nov 17, 2004
Title
Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4112A
Description
This single 44K formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. Arrays of this design have barcodes that begin with 16012391 or 2512391. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL6848.
Submission date
Nov 17, 2004
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (3292)
GSM36720 , GSM36726 , GSM36727 , GSM36728 , GSM36729 , GSM36730
GSM36731 ,
GSM36732 ,
GSM52897 ,
GSM52898 ,
GSM52899 ,
GSM52900 ,
GSM52901 ,
GSM52902 ,
GSM52903 ,
GSM52904 ,
GSM52905 ,
GSM52906 ,
GSM52907 ,
GSM52908 ,
GSM52909 ,
GSM67793 ,
GSM67794 ,
GSM67795 ,
GSM67796 ,
GSM67797 ,
GSM67798 ,
GSM67799 ,
GSM67800 ,
GSM67801 ,
GSM67802 ,
GSM67803 ,
GSM67804 ,
GSM67805 ,
GSM67806 ,
GSM67807 ,
GSM67808 ,
GSM67809 ,
GSM67810 ,
GSM67811 ,
GSM67812 ,
GSM89144 ,
GSM89145 ,
GSM89146 ,
GSM89147 ,
GSM89148 ,
GSM89149 ,
GSM89150 ,
GSM89151 ,
GSM89152 ,
GSM89153 ,
GSM89154 ,
GSM89155 ,
GSM94202 ,
GSM94203 ,
GSM94204 ,
GSM94205 ,
GSM94206 ,
GSM94207 ,
GSM94208 ,
GSM94209 ,
GSM102828 ,
GSM102829 ,
GSM102830 ,
GSM102831 ,
GSM102832 ,
GSM102833 ,
GSM102834 ,
GSM102835 ,
GSM102836 ,
GSM102837 ,
GSM102838 ,
GSM102839 ,
GSM102840 ,
GSM102841 ,
GSM102844 ,
GSM102845 ,
GSM102846 ,
GSM102847 ,
GSM102849 ,
GSM102852 ,
GSM106249 ,
GSM106250 ,
GSM106274 ,
GSM106275 ,
GSM106276 ,
GSM106277 ,
GSM106278 ,
GSM106279 ,
GSM106280 ,
GSM106281 ,
GSM106282 ,
GSM106283 ,
GSM106284 ,
GSM106285 ,
GSM107602 ,
GSM107603 ,
GSM107604 ,
GSM107605 ,
GSM107606 ,
GSM107607 ,
GSM107660 ,
GSM107662 ,
GSM107663 ,
GSM107664 ,
GSM108475 ,
GSM108478 ,
GSM108479 ,
GSM108480 ,
GSM108481 ,
GSM108482 ,
GSM108664 ,
GSM108665 ,
GSM108666 ,
GSM108667 ,
GSM108668 ,
GSM108669 ,
GSM108670 ,
GSM108671 ,
GSM108672 ,
GSM108673 ,
GSM108674 ,
GSM108675 ,
GSM108676 ,
GSM108677 ,
GSM108678 ,
GSM108679 ,
GSM108680 ,
GSM108681 ,
GSM108682 ,
GSM108683 ,
GSM108684 ,
GSM108685 ,
GSM108686 ,
GSM108687 ,
GSM108688 ,
GSM108689 ,
GSM108690 ,
GSM108691 ,
GSM108692 ,
GSM108693 ,
GSM108694 ,
GSM108695 ,
GSM108696 ,
GSM108697 ,
GSM108698 ,
GSM108699 ,
GSM108700 ,
GSM108701 ,
GSM108702 ,
GSM108703 ,
GSM108704 ,
GSM108705 ,
GSM108706 ,
GSM108707 ,
GSM108708 ,
GSM108709 ,
GSM108710 ,
GSM108711 ,
GSM108712 ,
GSM108713 ,
GSM108714 ,
GSM108715 ,
GSM108716 ,
GSM108717 ,
GSM108718 ,
GSM108719 ,
GSM108720 ,
GSM108721 ,
GSM108722 ,
GSM108723 ,
GSM108724 ,
GSM108725 ,
GSM108726 ,
GSM108727 ,
GSM108728 ,
GSM108729 ,
GSM108730 ,
GSM108731 ,
GSM108732 ,
GSM108733 ,
GSM108734 ,
GSM108735 ,
GSM108736 ,
GSM108737 ,
GSM108738 ,
GSM108739 ,
GSM108740 ,
GSM108741 ,
GSM108742 ,
GSM108743 ,
GSM108744 ,
GSM108745 ,
GSM108746 ,
GSM108747 ,
GSM108748 ,
GSM108749 ,
GSM108750 ,
GSM108751 ,
GSM108752 ,
GSM108753 ,
GSM108754 ,
GSM108755 ,
GSM108756 ,
GSM108757 ,
GSM108758 ,
GSM108759 ,
GSM108760 ,
GSM108761 ,
GSM108762 ,
GSM108763 ,
GSM108764 ,
GSM108765 ,
GSM108766 ,
GSM108767 ,
GSM108768 ,
GSM108769 ,
GSM108770 ,
GSM108771 ,
GSM108772 ,
GSM108773 ,
GSM108774 ,
GSM108775 ,
GSM108776 ,
GSM108777 ,
GSM108778 ,
GSM108779 ,
GSM108780 ,
GSM108781 ,
GSM108782 ,
GSM108783 ,
GSM108784 ,
GSM108785 ,
GSM108786 ,
GSM108787 ,
GSM108788 ,
GSM108789 ,
GSM108790 ,
GSM108791 ,
GSM108792 ,
GSM108793 ,
GSM108794 ,
GSM108795 ,
GSM109331 ,
GSM109332 ,
GSM109333 ,
GSM109334 ,
GSM109335 ,
GSM109336 ,
GSM110055 ,
GSM110056 ,
GSM110057 ,
GSM110058 ,
GSM110195 ,
GSM110196 ,
GSM110197 ,
GSM110198 ,
GSM110199 ,
GSM110200 ,
GSM113468 ,
GSM113469 ,
GSM113470 ,
GSM113471 ,
GSM113472 ,
GSM113473 ,
GSM113474 ,
GSM113475 ,
GSM113476 ,
GSM113477 ,
GSM113478 ,
GSM113479 ,
GSM113480 ,
GSM113481 ,
GSM113482 ,
GSM113483 ,
GSM113484 ,
GSM113485 ,
GSM113486 ,
GSM113487 ,
GSM113488 ,
GSM113489 ,
GSM113490 ,
GSM113491 ,
GSM113492 ,
GSM113493 ,
GSM113494 ,
GSM113495 ,
GSM113496 ,
GSM113497 ,
GSM113498 ,
GSM113499 ,
GSM113500 ,
GSM113501 ,
GSM113502 ,
GSM113503 ,
GSM113504 ,
GSM113505 ,
GSM113506 ,
GSM113507 ,
GSM113508 ,
GSM113509 ,
GSM113510 ,
GSM113511 ,
GSM113512 ,
GSM113513 ,
GSM113514 ,
GSM113515 ,
GSM113516 ,
GSM113517 ,
GSM113518 ,
GSM113519 ,
GSM113520 ,
GSM113521 ,
GSM113522 ,
GSM113523 ,
GSM113524 ,
GSM113525 ,
GSM113526 ,
GSM113527 ,
GSM113528 ,
GSM113529 ,
GSM113530 ,
GSM113531 ,
GSM113532 ,
GSM113533 ,
GSM113535 ,
GSM113536 ,
GSM113537 ,
GSM113538 ,
GSM113539 ,
GSM113540 ,
GSM113541 ,
GSM113542 ,
GSM113543 ,
GSM113544 ,
GSM113545 ,
GSM113546 ,
GSM113548 ,
GSM113549 ,
GSM113550 ,
GSM113551 ,
GSM113552 ,
GSM113553 ,
GSM113554 ,
GSM113555 ,
GSM113556 ,
GSM113557 ,
GSM113558 ,
GSM113559 ,
GSM113560 ,
GSM113561 ,
GSM113562 ,
GSM113563 ,
GSM113564 ,
GSM113565 ,
GSM113566 ,
GSM113567 ,
GSM113568 ,
GSM113569 ,
GSM113570 ,
GSM113571 ,
GSM113572 ,
GSM113573 ,
GSM113574 ,
GSM113575 ,
GSM113576 ,
GSM113577 ,
GSM113578 ,
GSM113579 ,
GSM113580 ,
GSM113581 ,
GSM113582 ,
GSM113583 ,
GSM113584 ,
GSM113585 ,
GSM113586 ,
GSM113587 ,
GSM113588 ,
GSM113589 ,
GSM113590 ,
GSM113591 ,
GSM113592 ,
GSM113593 ,
GSM113594 ,
GSM113595 ,
GSM113596 ,
GSM113615 ,
GSM113616 ,
GSM113617 ,
GSM113618 ,
GSM113619 ,
GSM113620 ,
GSM113621 ,
GSM113622 ,
GSM113623 ,
GSM113624 ,
GSM113625 ,
GSM113626 ,
GSM113627 ,
GSM113628 ,
GSM113629 ,
GSM113630 ,
GSM113631 ,
GSM113632 ,
GSM113633 ,
GSM113634 ,
GSM113635 ,
GSM113636 ,
GSM113637 ,
GSM113638 ,
GSM113639 ,
GSM113640 ,
GSM113641 ,
GSM113642 ,
GSM113643 ,
GSM113644 ,
GSM113645 ,
GSM113646 ,
GSM113647 ,
GSM113648 ,
GSM113649 ,
GSM113650 ,
GSM113651 ,
GSM113652 ,
GSM113653 ,
GSM113654 ,
GSM113655 ,
GSM113656 ,
GSM113657 ,
GSM113658 ,
GSM113659 ,
GSM113660 ,
GSM113661 ,
GSM113662 ,
GSM113663 ,
GSM113727 ,
GSM113728 ,
GSM113729 ,
GSM113730 ,
GSM113731 ,
GSM113732 ,
GSM113733 ,
GSM113734 ,
GSM113735 ,
GSM113736 ,
GSM113737 ,
GSM113738 ,
GSM113739 ,
GSM113740 ,
GSM113741 ,
GSM113742 ,
GSM113743 ,
GSM113744 ,
GSM113745 ,
GSM113746 ,
GSM113747 ,
GSM113748 ,
GSM113749 ,
GSM113750 ,
GSM113751 ,
GSM113752 ,
GSM113753 ,
GSM113754 ,
GSM113755 ,
GSM113756 ,
GSM113757 ,
GSM113758 ,
GSM113759 ,
GSM113760 ,
GSM113761 ,
GSM113762 ,
GSM113763 ,
GSM113764 ,
GSM113765 ,
GSM113766 ,
GSM113767 ,
GSM113768 ,
GSM113769 ,
GSM113770 ,
GSM113771 ,
GSM113772 ,
GSM113773 ,
GSM113774 ,
GSM113775 ,
GSM113776 ,
GSM113777 ,
GSM113778 ,
GSM113779 ,
GSM113780 ,
GSM113781 ,
GSM113782 ,
GSM113783 ,
GSM113784 ,
GSM113785 ,
GSM113786 ,
GSM113787 ,
GSM113788 ,
GSM113789 ,
GSM113790 ,
GSM113791 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (136)
GSE2035
Hearts_DD_Screening
GSE2740
Estrogen-regulated genes predict survival in estrogen receptor and/or progesterone receptor-positive breast cancers
GSE3155
Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms
GSE4117
Effects of laughter on gene expression profiles of patients with type 2 diabetes
GSE4214
Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR
GSE4595
Expression profiling of motor cortex in sporadic amyotrophic lateral sclerosis
GSE4707
Microarray Analysis of Differentially Expressed Genes in Placental Tissue of Severe Preeclampsia
GSE4763
Identity of the human cancer cell DNA hypermethylome revealed by gene expression profiling
GSE4809
A Stem Cell-Like Chromatin Pattern May Predispose Tumor Suppressor Genes to DNA Hypermethylation
GSE4823
Comparison of normal breast epithelium and stroma from reduction and I.D.C. cases
GSE4864
Novel mechanisms of galactose toxicity in human galactose-1-phosphate uridyltransferase (GALT)-deficient cells
GSE4901
Effects of laughter on gene expression profiles patients with type 2 diabetes (Tenri)
GSE4906
Comparing control and TGF-beta treated cord blood-derived human mast cells
GSE5176
Microarray Studies in the Laser Capture Microdissected SNc after a Single Administration of MPTP in Common Marmosets
GSE5272
Human airway inflammatory cell response to LPS and house dust mite antigen
GSE5346
Azaspiracid_jurkat_time series experiment
GSE5350
MicroArray Quality Control (MAQC) Project
GSE5546
Prediction of breast cancer prognosis by gene expression profile of TP53 status.
GSE5966
NB4 cells treated with lethal toxin
GSE6427
Gene expression changes in human colorectal cell line HCT116 DICER Exon5 knockout cells
GSE6711
Time course of glucocortiocid receptor isoforms
GSE7190
Three Reactive Compartments in Venous Malformations
GSE7215
Farnesol-induced apoptosis in human lung carcinoma cells is coupled to the endoplasmic reticulum (ER) stress response
GSE7315
autism with dup(15q)
GSE7316
autism with FMR1FM
GSE7317
control males
GSE7329
Gene expression profiles of lymphoblastoid cells
GSE7410
Gene expression in early stage cervical cancer
GSE7413
Molecular Characterization of Human Breast Tumor Microvessels
GSE7423
Down-stream effects in demyelinating neuropathies
GSE7469
Defective cell cycle checkpoint functions in melanoma are associated with altered patterns of gene expression
GSE7512
Allergen-stimulated CD4+ T cells from hen's egg allergic patients
GSE7960
Analysis of MYC- and PIM1-dependent genes
GSE8190
Human airway epithelial cell response to LPS and house dust mite antigen
GSE8347
Comparsion of different hESC line derived neural progenitor cells (hNPCs)
GSE8511
Profiling of prostate tissues in prostate cancer progression
GSE8834
Genome-wide gene expression profile analysis of MCL1 over-expressing B-NHL cells
GSE8845
Azaspiracid exposure to lymphocyte T cells
GSE8873
Islet cells CD40L_vs_ islet cells CTRL
GSE8917
Development of gene expression signatures for practical radiation biodosimetry
GSE9014
Tumor-associated stroma derived from primary clinical breast cancer samples
GSE9170
Five distinct biological processes and 14 differentially expressed genes characterize TEL/AML1-positive leukemia
GSE9578
HCMV virus produced in different cell types induces different transcriptional responses
GSE9637
X-inactivation in hESCs
GSE9709
Human induced pluripotent stem (iPS) cells from neonatal skin derived cells
GSE9815
Microarray Analysis of Differentially Expressed Genes in human bronchial cells(BEAS-2B) treated MTX
GSE10195
Peripheral Blood Cell Gene Expression Profiling in Patients with Coronary Artery Disease (Homo sapiens)
GSE10198
Mycobacterium tuberculosis targets DC-SIGN for immunosuppression through the PD-1/PD-Ligand pathway
GSE10601
Time course gene expression profiling of T-cell (CD40L+) induced, anti-CD40-siRNA treated, HUVECs
GSE10613
Convergence of Mutation and Epigenetic Alterations Identifies Common Target Genes in Breast and Colon Cancer
GSE10621
Prostaglandin E2 Receptor Subtype EP2- and EP4-regulated Gene Expression Profiling in Human Ciliary Smooth Muscle Cells
GSE10704
Human_IPAH_LMM_Arteries
GSE10893
Basal-like Breast Cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival
GSE11003
Gene expression profiling distinguishes JAK2V617F-negative from JAK2V617F-positive patients in essential thrombocythemia
GSE11064
AdHBx UV vs AdEasy UV vs HepG2
GSE11108
Study of HepG2 cells transduced with HBX expressing recombinant Adenoviruses (AdHBx) and treated with UV
GSE11223
Colon biopsies from UC patients and healthy controls
GSE11422
Genes differentially expressed upon CHD8 knockdown
GSE11423
Phosphate stimulates parathyroid cell proliferation and PTH release in organ cultures of hyperparathyroidism
GSE11429
In Vitro and In Vivo Analysis of B-Myb in Basal-Like Breast Cancer
GSE11975
Gene Expression in Adipose Tissue during Weight Loss
GSE12154
Stimulation of type I Interferon system by double-stranded RNA in cultured human thyroid follicles
GSE12164
Amiodarone effects on cultured human thyroid follicles
GSE12244
Iodide Inhibits Vascular Endothelial Growth Factor-A Expression in Cultured Human Thyroid Follicles
GSE12391
Melanoma: comparison between common nevi, radial/vertical growth phase melanoma, metastases and dysplastic nevi
GSE12428
Current smoking-specific gene expression signature in bronchial epithelium is enhanced in squamous cell lung cancer
GSE12449
CXCL12 Mediated T-Cell Migration Via Activation of Wnt5A
GSE12472
A COPD-related gene expression signature in squamous cell lung cancer
GSE12622
Tumor-associated stroma derived from primary clinical breast cancer samples (II)
GSE13029
Predicting Outcome in Follicular Lymphoma by Using Interactive Gene Pairs
GSE13673
Transcriptional Regulation of HL60 Neutrophil Differentiation: Promyelocyte trajectory vs. Neutrophil trajectory
GSE14063
CD38 modulates CXCR4 signals in chronic lymphocytic leukemia cells: potential therapeutic implications
GSE14067
Kidney transplantation
GSE14356
Kidney transplantation (Agilent set)
GSE14466
Quiescent keratinocytes and fibroblasts: radiation dose response
GSE15110
H1 hESC Exposed to Butyrate
GSE15112
ESC Exposed to Butyrate
GSE15356
Transcriptional and polysomal profile of poliovirus-infected HUVECs
GSE15363
Heterogeneity of Breast Cancer Vasculature
GSE15739
Il13-stimulation of human paSMCs
GSE15742
Reduced expression of RhoE promotes ROCK-dependent invasion in transformed human fibroblasts
GSE15838
Effect of IL-1 alpha, TNF alpha, or IFN gamma on gene expression levels in thyroid follicles (Euthyroid Graves' Disease)
GSE15862
GW7647 and Rosiglitazone treated human differentiated adipocytes
GSE15956
Dendritic Cells
GSE15966
Gene expression signature predictive of rapid response to imatinib mesylate in Gastrointestinal Stromal Tumor (GIST)
GSE16957
Iodide effect on mRNA expression levels of genes related to immunological function in cultured human thyroid follicles
GSE17011
Characterisation of the NRF2-mediated anti-oxidant gene battery by transcriptional profiling
GSE17596
Expression profiling of human mesoangioblasts indicates that S1P induces differentiation towards smooth muscle cells
GSE18188
Williams-Beuren syndrome: typical deletions versus atypical deletions of the 7q11.23 region
GSE18229
Phenotypic and Molecular Characterization of the Claudin-low Intrinsic Subtype of Breast Cancer
GSE18276
Identification of genes that are regulated by the A and B isoforms of the human progesterone receptor
GSE18372
Effect of Lactobacillus plantarum MB452 on the gene expression of the intestinal epithelial cell line Caco-2
GSE19477
A High-dose of genistein down-regulates TGF-beta pathway genes in human uterine leiomyoma cells
GSE20062
In vivo identification of solar-responsive gene network
GSE20147
Profiling of cutaneous tumors
GSE20191
Retinal pigment epithelium and photoreceptor and choroidal cells
GSE20350
Comparison Between Gene Expression Profiles of Sensitive and Resistant Trabectedin Liposarcoma Cell Lines
GSE20582
Human bronchial cells (BEAS-2B) treated with amiodarone (AM)
GSE20881
Colon biopsies from Crohns patients and healthy controls
GSE21846
Transcriptional profiling of 29 cases of diffuse large B cell lymphoma
GSE21849
Gene and microRNA expression data of diffuse large B cell lymphoma from human diagnostic frozen samples
GSE22226
Heterogeneity of Response to Chemotherapy and Recurrence-free Survival in Neoadjuvant Breast Cancer: Results from the I-SPY 1 TRIAL
GSE23327
Lung biopsies from sensitized or control rhesus macaques
GSE23693
Aberrant silencing of cancer-related genes by CpG hypermethylation occurs independently of their spatial organization in the nucleus
GSE23851
Altered Gene Expression in Human Adipose Stem Cells Cultured with Fetal Bovine Serum Compared to Human Supplements
GSE24151
Molecular profiling of cytomegalovirus-induced human CD8+ T cell differentiation
GSE24204
Identification of truncating mutations in HPCX1 families with NMD technology
GSE24205
HPCX1 linked prostate cancer
GSE24613
MiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosis
GSE24639
To identify novel metastasis-associated gene candidates in colorectal cancer
GSE25143
Characterization of Stem-cell derived Retinal Pigmented Epithelium (RPE)
GSE25175
PHK Cells: control vs. cyclosporine vs. 11R-VIVIT
GSE25303
HeLa cells: overexpression of importin alpha2
GSE25534
Tuberculosis patients, latent and uninfected controls; whole blood
GSE25830
TTF-1-induced ROR1 is required to sustain EGFR survival signaling in lung adenocarcinoma
GSE26338
Genomic analysis identifies unique signatures predictive of brain, lung, and liver relapse
GSE28000
Differential Gene Expression between African American and European American Colorectal Cancer Patients
GSE29609
Clear-cell renal cell carcinomas tumors
GSE30023
A comparative gene expression profiling of spondyloarthropathy and rheumatoid arthritis using oligonucleotide based microarrays
GSE32877
Gene profile for chemotherapy response in head and neck carcinoma
GSE33438
MCF-7 and ZR-75-1 cell lines hypoxia
GSE33439
Global gene expression analysis reveals a link between NDRG1 and vesicle transport.
GSE34499
Expression profile of maliganant mesothelioma cell lines
GSE35467
IGFBP2 driven glioma progression is prevented by blocking a clinically significant network of integrin, ILK, and NK-kB
GSE36889
Micro-scale genomic copy number aberrations as another means of mutagenesis in breast cancer
GSE37326
HepG2 treated with Polycyclic Aromatic Hydrocarbons (PAHs)
GSE41441
human placenta-derived cell line (JEG-3): Control vs. valproic acid(VPA)-treated
GSE42998
MicroRNA transcriptional regulation in lung cancer
GSE50510
Gene expression data for mock and 5-Aza-CdR treated colorectal cancer (CRC) cell lines SW480, HCT116 and RKO
GSE52727
Hes1 and Glucocorticoid Signaling in Bone Sarcoma Cells
GSE52784
HES1 Is a Master Regulator of Glucocorticoid Receptor-Dependent Gene Expression
GSE68239
Compartment-specific investigation of differential gene expression profiles in lungs with idiopathic pulmonariy fibrosis (IPF)
GSE68744
Extensive re-wiring of epithelial-stromal co-expression networks in breast cancer - ER-positive breast cancer validation dataset
GSE131275
Expression profiling of Normal colonic epilthelial RNA and colorectal cancer cell lines RNA
GSE150979
Pro- and anti-tumorigenic capacity of immunoproteasomes in shaping the tumor microenvironment
GSE156483
Hairy Cell Leukemia Cell Line JOK1 +/- RhoH Reconstitution
Relations
Alternative to
GPL6848
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
Name
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
REFSEQ
RefSeqAccession
GB_ACC
GenBankAccession
GENE
Entrez Gene ID
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
UNIGENE_ID
UnigeneID
ENSEMBL_ID
EnsemblID
TIGR_ID
TIGRID
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GO_ID
GoIDs
SEQUENCE
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
REFSEQ
GB_ACC
GENE
GENE_SYMBOL
GENE_NAME
UNIGENE_ID
ENSEMBL_ID
TIGR_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE
1
103
430
BrightCorner
BrightCorner
pos
2
103
428
NegativeControl
NegativeControl
neg
3
103
426
NM_001003689
A_23_P80353
FALSE
NM_001003689
NM_001003689
83746
L3MBTL2
l(3)mbt-like 2 (Drosophila)
Hs.517641
ENST00000216237
THC2264916
ref|NM_001003689|ref|NM_031488|gb|AL136564|ens|ENST00000216237
chr22:39950687-39950746
hs|22q13.2
Homo sapiens l(3)mbt-like 2 (Drosophila) (L3MBTL2), transcript variant 2, mRNA [NM_001003689]
GO:0003714(transcription corepressor activity)|GO:0005634(nucleus)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0016568(chromatin modification)|GO:0046872(metal ion binding)
CCCGACAAGGCTTCAAGTCCAGAGCTGCCTGTCTCCGTCGAGAACATCAAGCAGGAAACA
4
103
424
NM_005503
A_23_P158231
FALSE
NM_005503
NM_005503
321
APBA2
amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like)
Hs.525718
ENST00000219865
THC2241506
ref|NM_005503|gb|BC082986|gb|AF029108|ens|ENST00000219865
chr15:27193462-27196566
hs|15q13.1
Homo sapiens amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) (APBA2), mRNA [NM_005503]
GO:0005515(protein binding)|GO:0007399(nervous system development)|GO:0015031(protein transport)
CCACAGCCCACGAGAAGATAGTCCAAGCTCTGTCCAACTCGGTCGGAGAGATCCACATGA
5
103
422
NM_004672
A_32_P223017
FALSE
NM_004672
NM_004672
9064
MAP3K6
mitogen-activated protein kinase kinase kinase 6
Hs.194694
ENST00000357582
THC2236536
ref|NM_004672|gb|AB208805|ens|ENST00000357582|ens|ENST00000374036
chr1:27366686-27366347
hs|1p36.11
Homo sapiens mitogen-activated protein kinase kinase kinase 6 (MAP3K6), mRNA [NM_004672]
GO:0000166(nucleotide binding)|GO:0004674(protein serine/threonine kinase activity)|GO:0005524(ATP binding)|GO:0006468(protein amino acid phosphorylation)|GO:0016301(kinase activity)|GO:0016740(transferase activity)
GAATGTGGATTCAGGCACCATCCAAATGCTGTTGAACCATAGCTTCACCCTCCACACTCT
6
103
420
NM_001008727
A_24_P935782
FALSE
NM_001008727
NM_001008727
7675
ZNF121
zinc finger protein 121 (clone ZHC32)
Hs.501537
ENST00000320451
THC2427892
ref|NM_001008727|ens|ENST00000320451|thc|THC2427892
chr19:9538344-9538285
hs|19p13.2
Homo sapiens zinc finger protein 121 (clone ZHC32) (ZNF121), mRNA [NM_001008727]
GO:0003677(DNA binding)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding)
TGTGGAAAATTCTTTAGATATTCTTCATATCTTAATAGTCACATGCGAACCCATACTGGG
7
103
418
Pro25G
Pro25G
pos
8
103
416
NM_020630
A_24_P343695
FALSE
NM_020630
NM_020630
5979
RET
ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)
Hs.350321
ENST00000340058
THC2310316
ref|NM_020630|gb|BC003072|gb|M16029|gb|L03357
chr10:42937418-42939131
hs|10q11.21
Homo sapiens ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease) (RET), transcript variant 4, mRNA [NM_020630]
GO:0000166(nucleotide binding)|GO:0004713(protein-tyrosine kinase activity)|GO:0004872(receptor activity)|GO:0005509(calcium ion binding)|GO:0005524(ATP binding)|GO:0006468(protein amino acid phosphorylation)|GO:0007156(homophilic cell adhesion)|GO:0007165(signal transduction)|GO:0007166(cell surface receptor linked signal transduction)|GO:0007497(posterior midgut development)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016301(kinase activity)|GO:0016740(transferase activity)
TGGATGGCAATTGAATCCCTTTTTGATCATATCTACACCACGCAAAGTGATGTATGGTCT
9
103
414
BX094364
A_32_P109901
FALSE
BX094364
Hs.124584
THC2407425
gb|BX094364|thc|THC2407425
chr18:11643410-11643351
hs|18p11.21
BX094364 Soares_testis_NHT Homo sapiens cDNA clone IMAGp998D074163, mRNA sequence [BX094364]
GTGGTAACATAAAGTTTCAAGTTCAAAGTTTATGTGTCCTTCCTTACTCCCGGTGGAGTG
10
103
412
ENST00000333722
A_32_P158786
FALSE
XM_056680
BC015121
Hs.535190
ENST00000333722
THC2309386
ens|ENST00000333722|gb|BC015121|gb|BC014352|gb|BC039369
chr12:62954959-62950714
hs|12q14.2
Homo sapiens chromosome 12 open reading frame 56, mRNA (cDNA clone IMAGE:3685952). [BC015121]
GO:0005524(ATP binding)|GO:0015986(ATP synthesis coupled proton transport)|GO:0016469(proton-transporting two-sector ATPase complex)|GO:0046933(hydrogen-transporting ATP synthase activity, rotational mechanism)|GO:0046961(hydrogen-transporting ATPase activity, rotational mechanism)
TGTCCTCCCATCATTACTTTTGTGGCCAGTATTGTGAAACAAGTGGTGAGGGGTCTTTCA
11
103
410
E1A_r60_a20
E1A_r60_a20
pos
12
103
408
NM_003927
A_23_P15864
FALSE
NM_003927
NM_003927
8932
MBD2
methyl-CpG binding domain protein 2
Hs.25674
ENST00000256429
THC2234702
ref|NM_003927|gb|BC032638|gb|CR592999|ens|ENST00000256429
chr18:49935450-49935391
hs|18q21.2
Homo sapiens methyl-CpG binding domain protein 2 (MBD2), transcript variant 1, mRNA [NM_003927]
GO:0003677(DNA binding)|GO:0003696(satellite DNA binding)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008327(methyl-CpG binding)|GO:0016481(negative regulation of transcription)|GO:0016564(transcriptional repressor activity)
GACCCTAAGATGAAGCTGAGCTTTTGATGCCAGGTGCAATCTACTGGAAATGTAGCACTT
13
103
406
BC038371
A_32_P171530
FALSE
BC038371
Hs.133421
THC2338508
gb|BC038371|thc|THC2338508
chr5:38593473-38593532
hs|5p13.1
Homo sapiens cDNA clone IMAGE:4829282. [BC038371]
CAAGGCCAACGTGTTTTTTAAAGACCTTTCGATGAAACTCCAAAGCAATTTATAAATTGG
14
103
404
Pro25G
Pro25G
pos
15
103
402
NM_153610
A_24_P925413
FALSE
NM_153610
NM_153610
202333
CMYA5
cardiomyopathy associated 5
Hs.482625
ENST00000238522
THC2311177
ref|NM_153610|ens|ENST00000238522|gb|AF177292|gb|BC063134
chr5:79067786-79067845
hs|5q14.1
Homo sapiens cardiomyopathy associated 5 (CMYA5), mRNA [NM_153610]
GO:0005554(molecular function unknown)|GO:0008372(cellular component unknown)
CCCCATTAGAGCTTAGAGATAGTAATGAAATAGGGAAGACACAAATTACACTTGGATCTA
16
103
400
NM_181645
A_24_P305993
FALSE
NM_181645
NM_181645
159989
CCDC67
coiled-coil domain containing 67
Hs.436625
ENST00000354243
NP404677
ref|NM_181645|ens|ENST00000354243|ens|ENST00000298050|gb|BC017929
chr11:92743969-92744028
hs|11q21
Homo sapiens coiled-coil domain containing 67 (CCDC67), mRNA [NM_181645]
AGAGATGAGTTCATTATTGAAAAACTGAAATCAGCTGTAAATGAGATAGCACTAAGCAGG
17
103
398
NM_032809
A_24_P166931
FALSE
NM_032809
NM_032809
84895
FAM73B
family with sequence similarity 73, member B
Hs.632693
ENST00000358369
THC2246213
ref|NM_032809|gb|BC009114|ens|ENST00000358369|ens|ENST00000349214
chr9:128909700-128910085
hs|9q34.11
Homo sapiens family with sequence similarity 73, member B (FAM73B), mRNA [NM_032809]
GAGGGGTGGTATGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGACGCCT
18
103
396
NM_005656
A_23_P29067
FALSE
NM_005656
NM_005656
7113
TMPRSS2
transmembrane protease, serine 2
Hs.439309
ENST00000332149
THC2253120
ref|NM_005656|gb|AK123948|gb|BC051839|ens|ENST00000332149
chr21:41758833-41758774
hs|21q22.3
Homo sapiens transmembrane protease, serine 2 (TMPRSS2), mRNA [NM_005656]
GO:0004252(serine-type endopeptidase activity)|GO:0005044(scavenger receptor activity)|GO:0005887(integral to plasma membrane)|GO:0006508(proteolysis)|GO:0016020(membrane)
GAAGAAGAGAAAGATGTGTTTTGTTTTGGACTCTCTGTGGTCCCTTCCAATGCTGTGGGT
19
103
394
BE671816
A_32_P58999
FALSE
BE671816
Hs.122337
gb|BE671816
chr15:87544827-87544768
hs|15q26.1
BE671816 7a47d01.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE:3221857 3' similar to gb:X12433 PROTEIN PHPS1-2 (HUMAN);, mRNA sequence [BE671816]
ACTGGCTACTGGACAAATTGTATATTACCAGATCATCACTAGCAGCTTTCAGTTGCACTT
20
103
392
NM_015904
A_23_P218608
FALSE
NM_015904
NM_015904
9669
EIF5B
eukaryotic translation initiation factor 5B
Hs.158688
ENST00000289371
NP401649
ref|NM_015904|ens|ENST00000289371|gb|CR613918|gb|CR617158
chr2:99474487-99474546
hs|2q11.2
Homo sapiens eukaryotic translation initiation factor 5B (EIF5B), mRNA [NM_015904]
GO:0000166(nucleotide binding)|GO:0003743(translation initiation factor activity)|GO:0005515(protein binding)|GO:0005525(GTP binding)|GO:0005622(intracellular)|GO:0006412(protein biosynthesis)|GO:0006446(regulation of translational initiation)
GGACACTGATGGACTTAAGTATGGAAGGAAGAAAAATAGGTGTATAAAATGTTTTCCATG
Total number of rows: 44290 Table truncated, full table size 18902 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL1708_old_annotations.txt.gz
5.8 Mb
(ftp) (http)
TXT