GEO help: Mouse over screen elements for information.
Status
Public on May 09, 2008
Title
Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4112A
Description
This single 44K formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process.
Submission date
May 09, 2008
Last update date
Sep 01, 2015
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (1451)
GSM287789 , GSM287790 , GSM287791 , GSM287792 , GSM287793 , GSM287794
GSM287795 ,
GSM287796 ,
GSM287797 ,
GSM287798 ,
GSM287799 ,
GSM287800 ,
GSM287801 ,
GSM287802 ,
GSM287803 ,
GSM287804 ,
GSM287805 ,
GSM287806 ,
GSM287807 ,
GSM287808 ,
GSM287809 ,
GSM287810 ,
GSM287811 ,
GSM287812 ,
GSM287813 ,
GSM287814 ,
GSM287815 ,
GSM287816 ,
GSM287817 ,
GSM287818 ,
GSM287819 ,
GSM287820 ,
GSM287821 ,
GSM287822 ,
GSM287823 ,
GSM287824 ,
GSM287825 ,
GSM287826 ,
GSM287827 ,
GSM287828 ,
GSM287829 ,
GSM287830 ,
GSM287831 ,
GSM305072 ,
GSM305305 ,
GSM305310 ,
GSM305311 ,
GSM305330 ,
GSM305389 ,
GSM305390 ,
GSM305391 ,
GSM305392 ,
GSM313541 ,
GSM313542 ,
GSM313543 ,
GSM313544 ,
GSM313545 ,
GSM313546 ,
GSM313547 ,
GSM313548 ,
GSM313549 ,
GSM313550 ,
GSM313551 ,
GSM313552 ,
GSM313553 ,
GSM313554 ,
GSM313555 ,
GSM313556 ,
GSM313644 ,
GSM313647 ,
GSM313648 ,
GSM313649 ,
GSM313651 ,
GSM313654 ,
GSM313656 ,
GSM313658 ,
GSM315669 ,
GSM315670 ,
GSM315671 ,
GSM315672 ,
GSM315673 ,
GSM315674 ,
GSM315675 ,
GSM315676 ,
GSM317487 ,
GSM317488 ,
GSM317489 ,
GSM317490 ,
GSM317491 ,
GSM317492 ,
GSM317493 ,
GSM317494 ,
GSM317495 ,
GSM317496 ,
GSM317497 ,
GSM317498 ,
GSM317499 ,
GSM317500 ,
GSM317501 ,
GSM317502 ,
GSM317503 ,
GSM317504 ,
GSM318447 ,
GSM318537 ,
GSM318538 ,
GSM318539 ,
GSM318540 ,
GSM318579 ,
GSM318580 ,
GSM318581 ,
GSM318583 ,
GSM318584 ,
GSM318586 ,
GSM318591 ,
GSM318593 ,
GSM318594 ,
GSM318595 ,
GSM318596 ,
GSM318597 ,
GSM318598 ,
GSM318599 ,
GSM318600 ,
GSM322345 ,
GSM322346 ,
GSM322347 ,
GSM322348 ,
GSM322349 ,
GSM322350 ,
GSM322351 ,
GSM322352 ,
GSM322353 ,
GSM322354 ,
GSM322355 ,
GSM322356 ,
GSM325171 ,
GSM325172 ,
GSM325173 ,
GSM325174 ,
GSM325175 ,
GSM325176 ,
GSM325177 ,
GSM325178 ,
GSM325179 ,
GSM325180 ,
GSM351008 ,
GSM351614 ,
GSM351617 ,
GSM351618 ,
GSM351620 ,
GSM352178 ,
GSM352179 ,
GSM352180 ,
GSM352181 ,
GSM352182 ,
GSM352214 ,
GSM352219 ,
GSM352221 ,
GSM352223 ,
GSM364543 ,
GSM364544 ,
GSM364545 ,
GSM364546 ,
GSM381309 ,
GSM400957 ,
GSM400958 ,
GSM400959 ,
GSM400960 ,
GSM400961 ,
GSM400962 ,
GSM400963 ,
GSM400964 ,
GSM400965 ,
GSM400966 ,
GSM438281 ,
GSM438282 ,
GSM438287 ,
GSM438288 ,
GSM458463 ,
GSM458464 ,
GSM458465 ,
GSM458466 ,
GSM458467 ,
GSM458468 ,
GSM458469 ,
GSM458470 ,
GSM458471 ,
GSM458472 ,
GSM458473 ,
GSM458474 ,
GSM458475 ,
GSM458476 ,
GSM458477 ,
GSM458478 ,
GSM458479 ,
GSM458480 ,
GSM458481 ,
GSM458482 ,
GSM458483 ,
GSM458484 ,
GSM458485 ,
GSM458486 ,
GSM458487 ,
GSM458488 ,
GSM458489 ,
GSM458490 ,
GSM458493 ,
GSM458494 ,
GSM458497 ,
GSM458498 ,
GSM458501 ,
GSM458502 ,
GSM458505 ,
GSM458506 ,
GSM458509 ,
GSM458510 ,
GSM458515 ,
GSM458516 ,
GSM458517 ,
GSM458518 ,
GSM458519 ,
GSM458520 ,
GSM458521 ,
GSM458522 ,
GSM463767 ,
GSM463768 ,
GSM463769 ,
GSM463770 ,
GSM463771 ,
GSM463772 ,
GSM463773 ,
GSM463774 ,
GSM463775 ,
GSM463776 ,
GSM463777 ,
GSM463778 ,
GSM463779 ,
GSM463780 ,
GSM463781 ,
GSM463782 ,
GSM463783 ,
GSM463784 ,
GSM463785 ,
GSM463786 ,
GSM463787 ,
GSM463788 ,
GSM463789 ,
GSM463790 ,
GSM463791 ,
GSM463792 ,
GSM463793 ,
GSM463794 ,
GSM463795 ,
GSM463796 ,
GSM463797 ,
GSM463798 ,
GSM463799 ,
GSM463800 ,
GSM463801 ,
GSM463802 ,
GSM463803 ,
GSM463804 ,
GSM463805 ,
GSM463806 ,
GSM463807 ,
GSM463808 ,
GSM463809 ,
GSM463810 ,
GSM463811 ,
GSM463812 ,
GSM463813 ,
GSM463814 ,
GSM463815 ,
GSM463816 ,
GSM463817 ,
GSM463818 ,
GSM463819 ,
GSM463820 ,
GSM463821 ,
GSM463822 ,
GSM463823 ,
GSM463824 ,
GSM463825 ,
GSM463826 ,
GSM463827 ,
GSM463828 ,
GSM463829 ,
GSM463830 ,
GSM463831 ,
GSM463832 ,
GSM463833 ,
GSM463834 ,
GSM463835 ,
GSM463836 ,
GSM463837 ,
GSM463838 ,
GSM463839 ,
GSM463840 ,
GSM463841 ,
GSM463842 ,
GSM463843 ,
GSM463844 ,
GSM463845 ,
GSM463846 ,
GSM463847 ,
GSM463848 ,
GSM463849 ,
GSM463850 ,
GSM463851 ,
GSM463852 ,
GSM463853 ,
GSM463854 ,
GSM463855 ,
GSM463856 ,
GSM463857 ,
GSM463858 ,
GSM463859 ,
GSM463860 ,
GSM463861 ,
GSM463862 ,
GSM463863 ,
GSM463864 ,
GSM463865 ,
GSM463866 ,
GSM463867 ,
GSM463868 ,
GSM463869 ,
GSM463870 ,
GSM463871 ,
GSM463872 ,
GSM463873 ,
GSM463874 ,
GSM463875 ,
GSM463876 ,
GSM463877 ,
GSM463878 ,
GSM463879 ,
GSM463880 ,
GSM463881 ,
GSM463882 ,
GSM463883 ,
GSM463884 ,
GSM463885 ,
GSM463886 ,
GSM463887 ,
GSM463888 ,
GSM463889 ,
GSM463890 ,
GSM463891 ,
GSM463892 ,
GSM463893 ,
GSM463894 ,
GSM463895 ,
GSM463896 ,
GSM463897 ,
GSM463898 ,
GSM463899 ,
GSM463900 ,
GSM463901 ,
GSM463902 ,
GSM463903 ,
GSM463904 ,
GSM463905 ,
GSM463906 ,
GSM463907 ,
GSM463908 ,
GSM463909 ,
GSM476713 ,
GSM476715 ,
GSM476718 ,
GSM476720 ,
GSM476723 ,
GSM476724 ,
GSM476725 ,
GSM476726 ,
GSM476729 ,
GSM476730 ,
GSM476731 ,
GSM481071 ,
GSM481072 ,
GSM481073 ,
GSM481074 ,
GSM481075 ,
GSM481076 ,
GSM481077 ,
GSM481078 ,
GSM481079 ,
GSM481080 ,
GSM481081 ,
GSM481082 ,
GSM481083 ,
GSM481084 ,
GSM481085 ,
GSM481086 ,
GSM481087 ,
GSM481088 ,
GSM481089 ,
GSM481090 ,
GSM481091 ,
GSM481092 ,
GSM481093 ,
GSM481094 ,
GSM481095 ,
GSM481096 ,
GSM481097 ,
GSM481098 ,
GSM481099 ,
GSM481100 ,
GSM481101 ,
GSM481102 ,
GSM481103 ,
GSM481104 ,
GSM481105 ,
GSM481106 ,
GSM481107 ,
GSM481108 ,
GSM481109 ,
GSM481110 ,
GSM481111 ,
GSM481112 ,
GSM481113 ,
GSM481114 ,
GSM481115 ,
GSM481116 ,
GSM481117 ,
GSM481118 ,
GSM481119 ,
GSM486859 ,
GSM486860 ,
GSM486861 ,
GSM486862 ,
GSM486863 ,
GSM486864 ,
GSM486865 ,
GSM486866 ,
GSM486867 ,
GSM486868 ,
GSM486869 ,
GSM486870 ,
GSM486871 ,
GSM486872 ,
GSM486873 ,
GSM486874 ,
GSM486875 ,
GSM486876 ,
GSM486877 ,
GSM486878 ,
GSM486879 ,
GSM486880 ,
GSM486881 ,
GSM486882 ,
GSM486883 ,
GSM486884 ,
GSM486885 ,
GSM486886 ,
GSM486887 ,
GSM486888 ,
GSM486889 ,
GSM486890 ,
GSM486891 ,
GSM492850 ,
GSM492851 ,
GSM492852 ,
GSM492853 ,
GSM492854 ,
GSM492855 ,
GSM492856 ,
GSM492857 ,
GSM492858 ,
GSM492859 ,
GSM492860 ,
GSM492861 ,
GSM492862 ,
GSM492863 ,
GSM492864 ,
GSM492865 ,
GSM492866 ,
GSM492867 ,
GSM492868 ,
GSM492869 ,
GSM492870 ,
GSM492871 ,
GSM492872 ,
GSM492873 ,
GSM492874 ,
GSM492875 ,
GSM492876 ,
GSM492877 ,
GSM492878 ,
GSM492879 ,
GSM492880 ,
GSM492881 ,
GSM492882 ,
GSM492883 ,
GSM492884 ,
GSM492885 ,
GSM492886 ,
GSM492887 ,
GSM492888 ,
GSM492889 ,
GSM492890 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (56)
GSE11392 Pathway analysis of primary central nervous system lymphoma (PCNSL)
GSE12103 Differential Genetic and Functional Markers of Second Neoplasias in Hodgkin´s Disease Patients
GSE12493 A TGFB Responsive Gene Expression Signature is Associated With More Severe Skin and Lung Disease in Diffuse Scleroderma
GSE12589 CMV infection induces a rapid and sustained change in the expression of Natural Killer Cell Receptors on CD8+ T Cells
GSE12689 GBM invasion transcriptiome
GSE12841 Changes in gene expression of granulocytes during in vivo G-CSF/dexamethasone mobilization.
GSE12967 miR-K5 expression and inhibition
GSE14027 Monocyte Transmigration
GSE14575 Regulation of androgen receptor transcriptional activity and specificity by RNF6
GSE16022 Identification of IL4 dependent genes involved in reinforcement stage of Th2 differentiation
GSE17047 Candidate driver genes in focal chromosomal aberrations of stage II colon cancer
GSE17594 NOD2 and human ileal gene expression
GSE18378 Gene profiling and prediction of response to anastrozole neoadjuvant treatment in breast cancer
GSE18672 Mammographic density and genetics - A study of breast biopsies in relation to mammoraphic density
GSE19236 Expression analysis of dendritic cells, macrophages and monocytes
GSE19276 Osteosarcoma is characterized by impaired osteoclastogenesis and antigen presentation compared to normal bone
GSE19612 A Hierarchy of Self-Renewing Tumor-Initiating Cell Types in Glioblastoma
GSE19738 Major Depressive Disorder blood gene expression
GSE20293 miR-30e* induced gene expression alteration in glioma cells
GSE20482 Acute myeloid leukemia presenting with leukopenia: a distinct entity
GSE21519 Caco-2 cells: cycling vs 21-days differentiated cells
GSE22329 Innate signature induced in human mDCs by dengue vaccine candidates
GSE22821 NCI60 Expression Profiling using the Agilent Whole Human Genome Oligo Microarray
GSE24069 miR-K10a expression and inhibition
GSE25880 Characterization of the human host response to Encephalitozoon cuniculi infection
GSE25915 Gene expression data for two xenograft models representing luminal-like and basal-like breast cancer
GSE26304 Molecular diversity in ductal carcinoma in situ (DCIS) and early invasive breast cancer
GSE27005 NDRG2 transcriptional inactivation is involved in tumoral progression and worse clinical outcome of oligodendroglial tumors
GSE27984 PPD stimulated PBMCs from tuberculosis patients, latent infectious individuals and healthy controls.
GSE29575 Placenta environment induces the differentiation of macrophages into multinucleated giant cells
GSE30273 The transcriptional profile of Langhans-like multinucleated giant macrophages: Collapse of the inflammatory and immune responses
GSE30731 CrkII transgene induces atypical mammary gland development and tumorigenesis
GSE30896 Selective Targeting of the Proliferating Compartment in Chronic Lymhocytic Leukemia by Inhibition or Downregulation of Aurora Kinases
GSE32231 Molecular characterization of Nodal marginal zone lymphoma [Gene Expression]
GSE32233 Molecular characterization of Nodal marginal zone lymphoma
GSE33048 Gene Expression profiles in Retinoblastoma
GSE33723 Molecular events in endometrial carcinosarcomas and the role of high mobility group AT-hook 2 in endometrial carcinogenesis.
GSE34994 Gene expression signatures for MMP19 full length cDNA transfection in A549 cells.
GSE35356 Gene expression profiles of oral normal fibroblasts (NFs) and oral carcinoma-associated fibroblasts (CAFs)
GSE35988 The Mutational Landscape of Lethal Castrate Resistant Prostate Cancer
GSE40093 miR-K12-9 expression and inhibition
GSE40550 Gene expression profiling of HIV-1 latently infected memory CD4+ T cells
GSE40589 Gene expression in human subcutaneous adipose tissue after administration of Gastric Insulinotropic Peptide (GIP)
GSE42681 Regulating the angiogenic balance in tissues
GSE43076 Human lymphoblastoid cell lines: controls vs. patients with autism
GSE44201 Gene expression in human peripheral blood 48 hours after exposure to ionizing radiation
GSE45218 Gene Expression Test for Operational Renal Allograft Tolerance
GSE48063 Potential Roles of miR-29a in the Molecular Pathophysiology of T-Cell Acute Lymphoblastic Leukemia
GSE54621 Preclinical analysis of acquired resistance after prolonged efficacious metronomic oral topotecan chemotherapy plus pazopanib therapy in advanced ovarian carcinoma
GSE58431 TK6 toxicogenomics reference database
GSE65148 miR-K12-6-5p expression changes of human transcripts
GSE76472 KSHV miRNA transfection and inhibition
GSE78193 Blockade of interferon-γ normalizes IFN regulated gene expression in subjects with systemic lupus erythematosus (SLE)
GSE92454 Mesenchymal Transition in Human Mesothelial Cells In Vitro and Ex Vivo [TGF-β1 and IL-1β treatment]
GSE92455 Mesenchymal Transition in Human Mesothelial Cells In Vitro and Ex Vivo
GSE126053 Integrative Genomics Reveals Mechanisms of Copy Number Alterations Responsible for Transcriptional Deregulation in Colorectal Cancer
Relations Alternative to
GPL1708 Affiliated with
GPL9443
Data table header descriptions ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE A_23_P100001
A_23_P100001
FALSE
NM_207446 NM_207446 400451 FAM174B
family with sequence similarity 174, member B
Hs.27373
ENST00000557398
ref|NM_207446|ens|ENST00000557398|ens|ENST00000553393|ens|ENST00000327355
chr15:93160848-93160789
hs|15q26.1
Homo sapiens family with sequence similarity 174, member B (FAM174B), mRNA [NM_207446]
GO:0016020(membrane)|GO:0016021(integral to membrane)
ATCTCATGGAAAAGCTGGATTCCTCTGCCTTACGCAGAAACACCCGGGCTCCATCTGCCA
A_23_P100011
A_23_P100011
FALSE
NM_005829 NM_005829 10239 AP3S2
adaptor-related protein complex 3, sigma 2 subunit
Hs.632161
ref|NM_005829|ref|NM_001199058|ref|NR_023361|ref|NR_037582
chr15:90378743-90378684
hs|15q26.1
Homo sapiens adaptor-related protein complex 3, sigma 2 subunit (AP3S2), transcript variant 1, mRNA [NM_005829]
GO:0005794(Golgi apparatus)|GO:0006886(intracellular protein transport)|GO:0008565(protein transporter activity)|GO:0016020(membrane)|GO:0016192(vesicle-mediated transport)|GO:0030117(membrane coat)|GO:0030659(cytoplasmic vesicle membrane)|GO:0031410(cytoplasmic vesicle)
TCAAGTATTGGCCTGACATAGAGTCCTTAAGACAAGCAAAGACAAGCAAGGCAAGCACGT
A_23_P100022
A_23_P100022
FALSE
NM_014848 NM_014848 9899 SV2B
synaptic vesicle glycoprotein 2B
Hs.21754
ENST00000557410
ref|NM_014848|ref|NM_001167580|ens|ENST00000557410|ens|ENST00000330276
chr15:91838329-91838388
hs|15q26.1
Homo sapiens synaptic vesicle glycoprotein 2B (SV2B), transcript variant 1, mRNA [NM_014848]
GO:0001669(acrosomal vesicle)|GO:0006836(neurotransmitter transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0022857(transmembrane transporter activity)|GO:0030054(cell junction)|GO:0030672(synaptic vesicle membrane)|GO:0031410(cytoplasmic vesicle)|GO:0045202(synapse)
ATGTCGGCTGTGGAGGGTTAAAGGGATGAGGCTTTCCTTTGTTTAGCAAATCTGTTCACA
A_23_P100056
A_23_P100056
FALSE
NM_194272 NM_194272 348093 RBPMS2
RNA binding protein with multiple splicing 2
Hs.436518
ENST00000300069
ref|NM_194272|ens|ENST00000300069|gb|AK127873|gb|AK124123
chr15:65032375-65032316
hs|15q22.31
Homo sapiens RNA binding protein with multiple splicing 2 (RBPMS2), mRNA [NM_194272]
GO:0000166(nucleotide binding)|GO:0003676(nucleic acid binding)
CCCTGTCAGATAAGTTTAATGTTTAGTTTGAGGCATGAAGAAGAAAAGGGTTTCCATTCT
A_23_P100074
A_23_P100074
FALSE
NM_020371 NM_020371 57099 AVEN
apoptosis, caspase activation inhibitor
Hs.555966
ENST00000306730
ref|NM_020371|ens|ENST00000306730|gb|AF283508|gb|BC010488
chr15:34158739-34158680
hs|15q14
Homo sapiens apoptosis, caspase activation inhibitor (AVEN), mRNA [NM_020371]
GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0005624(membrane fraction)|GO:0006915(apoptosis)|GO:0006916(anti-apoptosis)|GO:0012505(endomembrane system)|GO:0016020(membrane)
GACCAGCCAGTTTACAAGCATGTCTCAAGCTAGTGTGTTCCATTATGCTCACAGCAGTAA
A_23_P100092
A_23_P100092
FALSE
NM_152455 NM_152455 146050 ZSCAN29
zinc finger and SCAN domain containing 29
Hs.418287
ENST00000396976
ref|NM_152455|ens|ENST00000396976|ens|ENST00000396972|gb|AF525399
chr15:43653388-43653329
hs|15q15.3
Homo sapiens zinc finger and SCAN domain containing 29 (ZSCAN29), mRNA [NM_152455]
GO:0003677(DNA binding)|GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0008270(zinc ion binding)|GO:0016032(viral reproduction)|GO:0046872(metal ion binding)
AGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAA
A_23_P100103
A_23_P100103
FALSE
NM_015289 NM_015289 23339 VPS39
vacuolar protein sorting 39 homolog (S. cerevisiae)
Hs.88025
ENST00000348544
ref|NM_015289|ens|ENST00000348544|ens|ENST00000318006|gb|AF280814
chr15:42453027-42452968
hs|15q15.1
Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39), mRNA [NM_015289]
GO:0005083(small GTPase regulator activity)|GO:0005737(cytoplasm)|GO:0005765(lysosomal membrane)|GO:0005768(endosome)|GO:0015031(protein transport)|GO:0016020(membrane)|GO:0030897(HOPS complex)|GO:0031902(late endosome membrane)
TGCATTTGCAAGATACCCCAATGGAGTGGTCGTCCATTACTTCTGTTCCAAAGAGGTAAA
A_23_P100111
A_23_P100111
FALSE
NM_007236 NM_007236 11261 CHP
calcium binding protein P22
Hs.406234
ENST00000392151
ref|NM_007236|ens|ENST00000392151|ens|ENST00000334660|gb|AK299660
chr15:41571553-41571612
hs|15q15.1
Homo sapiens calcium binding protein P22 (CHP), mRNA [NM_007236]
GO:0005509(calcium ion binding)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0006813(potassium ion transport)|GO:0007264(small GTPase mediated signal transduction)|GO:0015459(potassium channel regulator activity)|GO:0017156(calcium ion-dependent exocytosis)|GO:0045056(transcytosis)
TAGAACAGAAAATGAGCATCCGATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGT
A_23_P100127
A_23_P100127
FALSE
NM_170589 NM_170589 57082 CASC5
cancer susceptibility candidate 5
Hs.181855
ENST00000260369
ref|NM_170589|ref|NM_144508|ens|ENST00000260369|ens|ENST00000533001
chr15:40917525-40917584
hs|15q15.1
Homo sapiens cancer susceptibility candidate 5 (CASC5), transcript variant 1, mRNA [NM_170589]
GO:0000087(M phase of mitotic cell cycle)|GO:0000236(mitotic prometaphase)|GO:0000278(mitotic cell cycle)|GO:0000777(condensed chromosome kinetochore)|GO:0001669(acrosomal vesicle)|GO:0001675(acrosome assembly)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005654(nucleoplasm)|GO:0005694(chromosome)|GO:0005730(nucleolus)|GO:0005829(cytosol)|GO:0006334(nucleosome assembly)|GO:0007059(chromosome segregation)|GO:0008608(attachment of spindle microtubules to kinetochore)|GO:0010923(negative regulation of phosphatase activity)|GO:0034080(CenH3-containing nucleosome assembly at centromere)|GO:0051301(cell division)|GO:0071173(spindle assembly checkpoint)
CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT
A_23_P100133
A_23_P100133
FALSE
NM_015251 NM_015251 23300 ATMIN
ATM interactor
Hs.16349
ENST00000299575
ref|NM_015251|ens|ENST00000299575|gb|AB007891|gb|CR749457
chr16:81079095-81079154
hs|16q23.2
Homo sapiens ATM interactor (ATMIN), mRNA [NM_015251]
GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006974(response to DNA damage stimulus)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding)
TGGACCTTCGTCAGCTTTGACACCTCTTTTCTGATTTAAAGACACCAAGGAAAACTACAA
A_23_P100141
A_23_P100141
FALSE
NM_023076 NM_023076 64718 UNKL
unkempt homolog (Drosophila)-like
Hs.643536
ENST00000397464
ref|NM_023076|ref|NM_001193388|ref|NM_001193389|ens|ENST00000397464
chr16:1415345-1415286
hs|16p13.3
Homo sapiens unkempt homolog (Drosophila)-like (UNKL), transcript variant 3, mRNA [NM_023076]
GO:0003676(nucleic acid binding)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0016874(ligase activity)|GO:0046872(metal ion binding)
AGCAGAGGGGATCCAACGTCAGAGCTTTTAGAATTACTTTTTTAAGCAGCTGTCTTCTGG
A_23_P100156
A_23_P100156
FALSE
NM_017849 NM_017849 55654 TMEM127
transmembrane protein 127
Hs.164303
ENST00000432959
ref|NM_017849|ref|NM_001193304|ens|ENST00000432959|ens|ENST00000258439
chr2:96918149-96918090
hs|2q11.2
Homo sapiens transmembrane protein 127 (TMEM127), transcript variant 1, mRNA [NM_017849]
GO:0003674(molecular_function)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0008285(negative regulation of cell proliferation)|GO:0016021(integral to membrane)|GO:0032007(negative regulation of TOR signaling cascade)
ACCTTCAGTGTAGATCCAGATGGCCAACCTGTCCTTGTTAAGTTACTTGCTTCTTGGGAA
A_23_P100177
A_23_P100177
FALSE
NM_002428 NM_002428 4324 MMP15
matrix metallopeptidase 15 (membrane-inserted)
Hs.80343
ENST00000219271
ref|NM_002428|ens|ENST00000219271|gb|D85510|gb|BC036495
chr16:58079526-58079585
hs|16q21
Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15), mRNA [NM_002428]
GO:0004222(metalloendopeptidase activity)|GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0005887(integral to plasma membrane)|GO:0006464(protein modification process)|GO:0006508(proteolysis)|GO:0008047(enzyme activator activity)|GO:0008152(metabolic process)|GO:0008233(peptidase activity)|GO:0008270(zinc ion binding)|GO:0016020(membrane)|GO:0031012(extracellular matrix)|GO:0032355(response to estradiol stimulus)|GO:0043085(positive regulation of catalytic activity)
GACCATTTGTTTCTGTTTCCCCGACTGGGGCAGGGTGTTTAGAATTTTCTAAATGTAGTT
A_23_P100189
A_23_P100189
FALSE
NM_002761 NM_002761 5619 PRM1
protamine 1
Hs.2909
ENST00000312511
ref|NM_002761|ens|ENST00000312511|gb|Y00443|gb|AY651260
chr16:11374862-11374803
hs|16p13.13
Homo sapiens protamine 1 (PRM1), mRNA [NM_002761]
GO:0000786(nucleosome)|GO:0003677(DNA binding)|GO:0005634(nucleus)|GO:0005654(nucleoplasm)|GO:0005694(chromosome)|GO:0006323(DNA packaging)|GO:0006997(nucleus organization)|GO:0007275(multicellular organismal development)|GO:0007283(spermatogenesis)|GO:0007286(spermatid development)|GO:0030154(cell differentiation)|GO:0030261(chromosome condensation)
GTAGAAGACACTAATTGCACAAAATAGCACATCCACCAAACTCCTGCCTGAGAATGTTAC
A_23_P100196
A_23_P100196
FALSE
NM_005153 NM_005153 9100 USP10
ubiquitin specific peptidase 10
Hs.136778
ENST00000219473
ref|NM_005153|ens|ENST00000219473|ens|ENST00000397953|ens|ENST00000540269
chr16:84812831-84812890
hs|16q24.1
Homo sapiens ubiquitin specific peptidase 10 (USP10), mRNA [NM_005153]
GO:0002039(p53 binding)|GO:0004221(ubiquitin thiolesterase activity)|GO:0004843(ubiquitin-specific protease activity)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005769(early endosome)|GO:0006281(DNA repair)|GO:0006508(proteolysis)|GO:0006511(ubiquitin-dependent protein catabolic process)|GO:0008233(peptidase activity)|GO:0008234(cysteine-type peptidase activity)|GO:0016579(protein deubiquitination)|GO:0030330(DNA damage response, signal transduction by p53 class mediator)|GO:0042980(cystic fibrosis transmembrane conductance regulator binding)|GO:0045111(intermediate filament cytoskeleton)
TTGGGGTTCGTGCACAACACAGCTTCTGTTGACTCTAACTTCCAAATCAAAATCATTTGG
A_23_P100203
A_23_P100203
FALSE
NM_001537 NM_001537 3281 HSBP1
heat shock factor binding protein 1
Hs.250899
ENST00000433866
ref|NM_001537|ens|ENST00000433866|gb|AK172732|gb|BX537440
chr16:83846244-83846303
hs|16q23.3
Homo sapiens heat shock factor binding protein 1 (HSBP1), mRNA [NM_001537]
GO:0000122(negative regulation of transcription from RNA polymerase II promoter)|GO:0003714(transcription corepressor activity)|GO:0005634(nucleus)|GO:0005856(cytoskeleton)|GO:0006936(muscle contraction)
ACAAATTACATGGGGAACATAAAGGAGTGAGATCCTTCTGTGATAAAATGAATTCACCAC
A_23_P100220
A_23_P100220
FALSE
NM_024939 NM_024939 80004 ESRP2
epithelial splicing regulatory protein 2
Hs.592053
ENST00000251366
ref|NM_024939|ens|ENST00000251366|gb|BC030146|gb|BC052309
chr16:68263113-68263054
hs|16q22.1
Homo sapiens epithelial splicing regulatory protein 2 (ESRP2), mRNA [NM_024939]
GO:0000166(nucleotide binding)|GO:0003729(mRNA binding)|GO:0005634(nucleus)|GO:0006397(mRNA processing)|GO:0043484(regulation of RNA splicing)
CTCAACTGCTGGCTCTTCTTCCCTTTGTATTTGTGTAAGGAGCACTGCACTCCCATAAAA
A_23_P100240
A_23_P100240
FALSE
NM_004062 NM_004062 1014 CDH16
cadherin 16, KSP-cadherin
Hs.513660
ref|NM_004062|ref|NM_001204744|ref|NM_001204745|ref|NM_001204746
chr16:66942101-66942042
hs|16q22.1
Homo sapiens cadherin 16, KSP-cadherin (CDH16), transcript variant 1, mRNA [NM_004062]
GO:0005509(calcium ion binding)|GO:0005886(plasma membrane)|GO:0007155(cell adhesion)|GO:0007156(homophilic cell adhesion)|GO:0016021(integral to membrane)
GGGAGTGCTCCAAATGTCAGGGTGTTTGCCCAATAATAAAGCCCCAGAGAACTGGGCTGG
A_23_P10025
A_23_P10025
FALSE
NM_006159 NM_006159 4753 NELL2
NEL-like 2 (chicken)
Hs.505326
ref|NM_006159|ref|NM_001145108|ref|NM_001145107|ref|NM_001145110
chr12:44902496-44902437
hs|12q12
Homo sapiens NEL-like 2 (chicken) (NELL2), transcript variant 2, mRNA [NM_006159]
GO:0005198(structural molecule activity)|GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0005576(extracellular region)|GO:0007155(cell adhesion)|GO:0040008(regulation of growth)
ACATCACCATGTAGAAGAATGGGCGTACAGTATATACCGTGACATCCTGAACCCTGGATA
A_23_P100263
A_23_P100263
FALSE
NM_198390 NM_198390 80790 CMIP
c-Maf inducing protein
Hs.594095
ENST00000537098
ref|NM_198390|ref|NM_030629|ens|ENST00000537098|ens|ENST00000539778
chr16:81743583-81743642
hs|16q23.3
Homo sapiens c-Maf inducing protein (CMIP), transcript variant 1, mRNA [NM_198390]
GO:0005634(nucleus)|GO:0005737(cytoplasm)
CCCCCGCCGAATTCTTTTAGCTTCGTAATTGGAACCTTTGACCTGATCTAAAGTGGACTT
41073 24893 Kbytes .Supplementary data files not provided
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