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Platform GPL13369 Query DataSets for GPL13369
Status Public on Apr 01, 2012
Title Illumina Human Whole-Genome DASL HT
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol see manufacturer's website
Catalog number DA-801-1003
 
 
Submission date Apr 05, 2011
Last update date Apr 01, 2012
Contact name Adi Tarca
E-mail(s) atarca@med.wayne.edu
Phone 3135775305
Organization name Wayne State University
Department Perinatology Research Branch (NIH/NICHD)
Street address 3990 John R
City Detroit
State/province MI
ZIP/Postal code 48188
Country USA
 
Samples (513) GSM701638, GSM701639, GSM701640, GSM701641, GSM701642, GSM701643 
Series (22)
GSE28387 Fetal blood transcriptome in maternal anti-fetal rejection
GSE38765 Human regulatory T cells induce lymphocyte senescence
GSE41929 Genome-wide analysis of gene expression in response to bortezomib treatment [human cell lines].

Data table header descriptions
ID
SPECIES
SOURCE Transcript sequence source name
SEARCH_KEY Internal id useful for custom design array
TRANSCRIPT Internal transcript id
ILMN_GENE Internal gene symbol
SOURCE_REFERENCE_ID Id in the source database
REFSEQ_ID Refseq id
UNIGENE_ID Unigene id
ENTREZ_GENE_ID Entrez gene id
GI Genbank id
ACCESSION Genbank accession number
SYMBOL Gene symbol from the source database
PROTEIN_PRODUCT Genbank protein accession number
ARRAY_ADDRESS_ID Decoder id
PROBE_TYPE Information about what this probe is targeting
PROBE_START Position of the probe relative to the 5' of the source transcript sequence
PROBE_SEQUENCE Probe sequence
CHROMOSOME Chromosome
PROBE_CHR_ORIENTATION Orientation on the NCBI genome built
PROBE_COORDINATES genomic position of the probe on the NCBI genome built
DEFINITION Gene description from the source
ONTOLOGY_COMPONENT Cellular component annotations from Gene Ontology project
ONTOLOGY_PROCESS Biological process annotations from Gene Ontology project
ONTOLOGY_FUNCTION Molecular function annotations from Gene Ontology project
SYNONYMS Gene symbol synonyms from Refseq
OBSOLETE_PROBE_ID Identifier of probe id before bgx time
GB_ACC GenBank Accession number
SPOT_ID

Data table
ID SPECIES SOURCE SEARCH_KEY TRANSCRIPT ILMN_GENE SOURCE_REFERENCE_ID REFSEQ_ID UNIGENE_ID ENTREZ_GENE_ID GI ACCESSION SYMBOL PROTEIN_PRODUCT ARRAY_ADDRESS_ID PROBE_TYPE PROBE_START PROBE_SEQUENCE CHROMOSOME PROBE_CHR_ORIENTATION PROBE_COORDINATES DEFINITION ONTOLOGY_COMPONENT ONTOLOGY_PROCESS ONTOLOGY_FUNCTION SYNONYMS OBSOLETE_PROBE_ID GB_ACC SPOT_ID
ILMN_1762337 Homo sapiens RefSeq NM_182762.2 ILMN_183371 7A5 NM_182762.2 NM_182762.2 346389 47271497 NM_182762.2 7A5 NP_877439.2 6450255 S 2725 GTGTTACAAGACCTTCAGTCAGCTTTGGACAGAATGAAAAACCCTGTGAC 7 - 20147187-20147236 Homo sapiens putative binding protein 7a5 (7A5), mRNA. NM_182762.2
ILMN_2055271 Homo sapiens RefSeq NM_130786.2 ILMN_175569 A1BG NM_130786.2 NM_130786.2 1 21071029 NM_130786.2 A1BG NP_570602.2 2570615 S 3151 GGGATTACAGGGGTGAGCCACCACGCCCAGCCCCAGCTTAGTTTTTTAAA 19 - 63548541-63548590 Homo sapiens alpha-1-B glycoprotein (A1BG), mRNA. The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [pmid 3458201] [evidence IDA] Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ] Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ] A1B; GAB; HYST2477; ABG; DKFZp686F0970 A1B; GAB; HYST2477; ABG; DKFZp686F0970 NM_130786.2
ILMN_1736007 Homo sapiens RefSeq NM_130786.2 ILMN_18893 A1BG NM_130786.2 NM_130786.2 1 21071029 NM_130786.2 A1BG NP_570602.2 6370619 S 2512 GCAGAGCTGGACGCTGTGGAAATGGCTGGATTCCTCTGTGTTCTTTCCCA 19 - 63549180-63549229 Homo sapiens alpha-1-B glycoprotein (A1BG), mRNA. The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [pmid 3458201] [evidence IDA] Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end [goid 8150] [evidence ND ] Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions [goid 3674] [evidence ND ] A1B; GAB; HYST2477; ABG; DKFZp686F0970 A1B; GAB; HYST2477; ABG; DKFZp686F0970 NM_130786.2
ILMN_2383229 Homo sapiens RefSeq NM_138932.1 ILMN_18532 A1CF NM_138932.1 NM_138932.1 29974 20357574 NM_138932.1 A1CF NP_620310.1 2600039 A 1826 TGCTGTCCCTAATGCAACTGCACCCGTGTCTGCAGCCCAGCTCAAGCAAG 10 - 52566586-52566635 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 2, mRNA. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 12881431] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [pmid 10781591] [evidence IDA] Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [pmid 12881431] [evidence IDA] Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [pmid 11871661] [evidence IDA]; Interacting selectively with single-stranded RNA [goid 3727] [pmid 11871661] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12896982] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10669759] [evidence IPI] ASP; MGC163391; APOBEC1CF; ACF65; ACF64; ACF; RP11-564C4.2 ASP; APOBEC1CF; ACF65; ACF64; RP11-564C4.2; MGC163391; ACF NM_138932.1
ILMN_1806310 Homo sapiens RefSeq NM_138933.1 ILMN_7300 A1CF NM_014576.2 NM_014576.2 29974 20357571 NM_014576.2 A1CF NP_055391.2 2650615 A 1893 GAGGTCTACCCAACTTTTGCAGTGACTGCCCGAGGGGATGGATATGGCAC 10 - 52566495-52566544 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 1, mRNA. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 12881431] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [pmid 10781591] [evidence IDA] Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [pmid 12881431] [evidence IDA] Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [pmid 11871661] [evidence IDA]; Interacting selectively with single-stranded RNA [goid 3727] [pmid 11871661] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12896982] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10669759] [evidence IPI] ASP; APOBEC1CF; ACF65; ACF64; RP11-564C4.2; MGC163391; ACF ASP; APOBEC1CF; ACF65; ACF64; RP11-564C4.2; MGC163391; ACF NM_014576.2
ILMN_1779670 Homo sapiens RefSeq NM_138933.1 ILMN_165661 A1CF NM_138933.1 NM_138933.1 29974 20357577 NM_138933.1 A1CF NP_620311.1 5340672 I 278 GGCACATGCCCAGAGCCAGAAGCGAGCATGAGCACAGCAATTCCTGGCCT 10 - 52610479-52610528 Homo sapiens APOBEC1 complementation factor (A1CF), transcript variant 3, mRNA. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 12881431] [evidence IDA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; Protein complex that mediates editing of the mRNA encoding apolipoprotein B; catalyzes the deamination of C to U (residue 6666 in the human mRNA). Contains a catalytic subunit, APOBEC-1, and other proteins (e.g. human ASP; rat ASP and KSRP) [goid 30895] [pmid 10781591] [evidence IDA] Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide [goid 6397] [evidence IEA]; Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation [goid 50821] [pmid 12881431] [evidence IDA] Interacting selectively with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose moiety [goid 166] [evidence IEA]; Interacting selectively with double-stranded RNA [goid 3725] [pmid 11871661] [evidence IDA]; Interacting selectively with single-stranded RNA [goid 3727] [pmid 11871661] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 12896982] [evidence IPI]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 10669759] [evidence IPI] ASP; ACF65; ACF64; RP11-564C4.2; MGC163391 ASP; APOBEC1CF; ACF65; ACF64; RP11-564C4.2; MGC163391; ACF NM_138933.1
ILMN_1653355 Homo sapiens RefSeq NM_001005356.1 ILMN_21001 A26C3 NM_001004053.2 NM_001004053.2 23784 126090670 NM_001004053.2 A26C3 NP_001004053.2 2000519 A 687 CTGCTCTACATCTGGCCTCTGCCAATGGAAATTCAGAAGTAGTAAAACTC 22 - 14662540-14662589 Homo sapiens ANKRD26-like family C, member 3 (A26C3), mRNA. ACTBL1; POTE22 POTE-14; ACTBL1; POTE22; POTE14 NM_001004053.2
ILMN_1717783 Homo sapiens RefSeq NM_001004053.1 ILMN_21001 A26C3 NM_001004053.2 NM_001004053.2 23784 126090670 NM_001004053.2 A26C3 NP_001004053.2 3870044 S 1957 GTCATGCTAAGACTGGAACTAGACATAATGAAACATCAGAGCCAGCTAAG 22 - 14636561-14636610 Homo sapiens ANKRD26-like family C, member 3 (A26C3), mRNA. ACTBL1; POTE22 POTE22 NM_001004053.2
ILMN_1705025 Homo sapiens RefSeq XM_942354.1 ILMN_21001 A26C3 NM_001004053.2 NM_001004053.2 23784 126090670 NM_001004053.2 A26C3 NP_001004053.2 7050209 A 701 GCCTCTGCCAATGGAAATTCAGAAGTAGTAAAACTCCTGCTGGACAGACG 22 - 14662526-14662575 Homo sapiens ANKRD26-like family C, member 3 (A26C3), mRNA. ACTBL1; POTE22 NM_001004053.2
ILMN_1814316 Homo sapiens RefSeq NM_018723.2 ILMN_9081 A2BP1 NM_145891.1 NM_145891.1 54715 22538404 NM_145891.1 A2BP1 NP_665898.1 1580181 A 1303 CAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCAC 16 + 7666834-7666841:7699059-7699100 Homo sapiens ataxin 2-binding protein 1 (A2BP1), transcript variant 1, mRNA. FOX1; HRNBP1 FOX1; HRNBP1 NM_145891.1
ILMN_2359168 Homo sapiens RefSeq NM_145891.1 ILMN_9081 A2BP1 NM_145891.1 NM_145891.1 54715 22538404 NM_145891.1 A2BP1 NP_665898.1 5220554 A 1309 CAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCACTTGCTC 16 + 7666840-7666841:7699059-7699106 Homo sapiens ataxin 2-binding protein 1 (A2BP1), transcript variant 1, mRNA. FOX1; HRNBP1 FOX1; HRNBP1 NM_145891.1
ILMN_1731507 Homo sapiens RefSeq NM_145893.1 ILMN_9675 A2BP1 NM_145893.1 NM_145893.1 54715 22538408 NM_145893.1 A2BP1 NP_665900.1 5390438 I 1312 AAATCAGTTCGTCTTCGTTGCAGCAGATGAAATTTCTTGTAACACCTCTG 16 + 7683319-7683368 Homo sapiens ataxin 2-binding protein 1 (A2BP1), transcript variant 3, mRNA. FOX1; HRNBP1 FOX1; HRNBP1 NM_145893.1
ILMN_1787689 Homo sapiens RefSeq NM_018723.2 ILMN_5821 A2BP1 NM_018723.2 NM_018723.2 54715 22538402 NM_018723.2 A2BP1 NP_061193.2 6420681 I 758 CTCCAGCTTATGGTGAGTGTGGCTGGGGGTGCAGAGAGCGCACGGGAATT 16 + 6009890-6009939 Homo sapiens ataxin 2-binding protein 1 (A2BP1), transcript variant 4, mRNA. FOX1; HRNBP1 FOX1; HRNBP1 NM_018723.2
ILMN_3241953 Homo sapiens RefSeq NM_033110.1 ILMN_365133 A2LD1 NM_033110.1 NM_033110.1 87769 34147452 NM_033110.1 A2LD1 NP_149101.1 4760377 S 1037 TACTGATTCTGGCCTGTAACCCCTGAGAAAGCCGATTTTACACGGCTGGG 13 - 101183950-101183999 Homo sapiens AIG2-like domain 1 (A2LD1), mRNA. NM_033110.1
ILMN_1745607 Homo sapiens RefSeq NM_000014.4 ILMN_8023 A2M NM_000014.4 NM_000014.4 2 66932946 NM_000014.4 A2M NP_000005.2 2370438 S 4524 CTTGGAAATGCTTGAAGACCACAAGGCTGAAAAGTGCTTTGCTGGAGTCC 12 - 9220383-9220418:9220419-9220432 Homo sapiens alpha-2-macroglobulin (A2M), mRNA. The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [pmid 14718574] [evidence NAS]; The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [pmid 59727] [evidence EXP]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 18029348] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 18029348] [evidence IDA]; The volume enclosed by the membrane of the platelet alpha granule [goid 31093] [pmid 59727] [evidence EXP] The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer [goid 51260] [evidence NAS] Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; [goid 17114] [evidence IEA]; Interacting selectively with any enzyme [goid 19899] [pmid 11435418] [evidence IPI]; Interacting selectively with interleukin-8 [goid 19959] [pmid 10880251] [evidence IPI]; Interacting selectively with interleukin-1 [goid 19966] [pmid 9714181] [evidence IDA]; Interacting selectively with tumor necrosis factor, a proinflammatory cytokine produced by monocytes and macrophages [goid 43120] [pmid 9714181] [evidence IDA] alpha 2M; CPAMD5; S863-7; FWP007; DKFZp779B086 alpha 2M; CPAMD5; S863-7; FWP007; DKFZp779B086 NM_000014.4
ILMN_2136495 Homo sapiens RefSeq NM_144670.2 ILMN_17375 A2ML1 NM_144670.2 NM_144670.2 144568 74271844 NM_144670.2 A2ML1 NP_653271.2 4050154 S 4889 TGTAATCGCAGCCCCTTGGAAGGCCAAGGCAGGAGAATCGCCTCAACACT 12 + 8920412-8920461 Homo sapiens alpha-2-macroglobulin-like 1 (A2ML1), mRNA. The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite [goid 5576] [evidence IEA]; That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid [goid 5615] [pmid 16298998] [evidence IDA] Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins [goid 52548] [pmid 16298998] [evidence IDA] Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme [goid 4867] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; [goid 17114] [pmid 16298998] [evidence IDA] FLJ41597; FLJ25179; DKFZp686O1010; DKFZp686L1821; DKFZp686D2011; FLJ41598; FLJ39129; DKFZp686C1729; DKFZp686G1812; CPAMD9; FLJ16045; FLJ41607 DKFZp686O1010; DKFZp686L1821; CPAMD9; FLJ16045; FLJ41607; FLJ41597; FLJ25179; DKFZp686D2011; FLJ41598; FLJ39129; DKFZp686C1729; DKFZp686G1812 NM_144670.2
ILMN_1668111 Homo sapiens RefSeq XM_940724.1 ILMN_171902 A3GALT2 NM_001080438.1 NM_001080438.1 127550 122937274 NM_001080438.1 A3GALT2 NP_001073907.1 1740066 A 890 TCTTCTGGCTGCACAAGCCCGCCAAGGTGCTGTCGCCCGAGTTCTGCTGG 1 - 33545037-33545086 Homo sapiens alpha 1,3-galactosyltransferase 2 (A3GALT2), mRNA. A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA] The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA] Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP-galactose = alpha-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP [goid 47276] [evidence IEA] NM_001080438.1
ILMN_2295559 Homo sapiens RefSeq NM_001080438.1 ILMN_171902 A3GALT2 NM_001080438.1 NM_001080438.1 127550 122937274 NM_001080438.1 A3GALT2 NP_001073907.1 4830092 I 583 ATGTTCTGCATGGACGTGGACCAGCACTTCAGCGGCACTTTTGGGCCCGA 1 - 33545344-33545393 Homo sapiens alpha 1,3-galactosyltransferase 2 (A3GALT2), mRNA. A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA] The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [evidence IEA] Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor) [goid 16758] [evidence IEA]; Interacting selectively with manganese (Mn) ions [goid 30145] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Catalysis of the reaction: beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP-galactose = alpha-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP [goid 47276] [evidence IEA] NM_001080438.1
ILMN_1735045 Homo sapiens RefSeq NM_017436.4 ILMN_25424 A4GALT NM_017436.4 NM_017436.4 53947 55956926 NM_017436.4 A4GALT NP_059132.1 3610072 S 1993 TCTTTAGGCTCAGGAGAAGCATTTTAAAGAAACCCCCACCCTGCCGCCCG 22 - 43088176-43088225 Homo sapiens alpha 1,4-galactosyltransferase (A4GALT), mRNA. The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [pmid 10748143] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA]; Located such that some or all of the gene product itself penetrates at least one phospholipid bilayer of the Golgi complex membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer [goid 30173] [pmid 10748143] [evidence NAS]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA] The chemical reactions and pathways resulting in the formation of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide [goid 6688] [pmid 10748143] [evidence NAS]; A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of the plasma membrane [goid 7009] [pmid 10747952] [evidence IDA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA] Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [pmid 10747952] [evidence IDA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the reaction: beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP-galactose = alpha-D-galactosyl-(1,4)-beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP [goid 50512] [evidence IEA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA] P1; A14GALT; A4GALT1; PK P1; A14GALT; A4GALT1; PK NM_017436.4
ILMN_1680754 Homo sapiens RefSeq NM_016161.1 ILMN_19436 A4GNT NM_016161.1 NM_016161.1 51146 7705858 NM_016161.1 A4GNT NP_057245.1 6480136 S 1053 CCACATGAACCAGGAGGGGCGGGCTGTGATTAGAGGAAGCAACACACTGG 3 - 139325896-139325945 Homo sapiens alpha-1,4-N-acetylglucosaminyltransferase (A4GNT), mRNA. The lipid bilayer surrounding any of the compartments of the Golgi apparatus [goid 139] [evidence IEA]; That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [pmid 10430883] [evidence TAS]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [pmid 18029348] [evidence IDA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [pmid 18029348] [evidence IDA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [pmid 18029348] [evidence IDA]; A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions [goid 5794] [evidence IEA]; The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack [goid 5795] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [pmid 10430883] [evidence TAS] The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule [goid 5975] [pmid 10430883] [evidence TAS]; The formation of O-glycans by addition of glycosyl groups either to the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or to the phenol group of peptidyl-tyrosine [goid 6493] [pmid 10430883] [evidence TAS]; The chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide [goid 9101] [pmid 10430883] [evidence IDA] Catalysis of the transfer of an N-acetylglucosaminyl residue from UDP-N-acetyl-glucosamine to an oligosaccharide [goid 8375] [pmid 10430883] [evidence IDA]; Catalysis of the transfer of a galactosyl group to an acceptor molecule, typically another carbohydrate or a lipid [goid 8378] [evidence IEA]; Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor) [goid 16757] [evidence IEA] alpha4GnT; MGC149493 alpha4GnT; MGC149493 NM_016161.1

Total number of rows: 47323

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