|
| Status |
Public on Apr 01, 2012 |
| Title |
59131_Cord Blood |
| Sample type |
RNA |
| |
|
| Source name |
59131
|
| Organism |
Homo sapiens |
| Characteristics |
case identifier: 59131
group: FIRS2
fetus gender: female
preterm-delivery: 1
tissue: Cord Blood
|
| Extracted molecule |
total RNA |
| Extraction protocol |
See the technical manual PAXgene_Blood_RNA_Kit_Handbook_(Version_2)2009.pdf from http://www.preanalytix.com/ , pages 34-39.
|
| Label |
biotin
|
| Label protocol |
Standard Illumina labeling protocol for DASL assays; see WGDASL_HT_Experienced_User_Card_15018211_B.pdf from Illumnia Inc.
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol for DASL assays; see WGDASL_HT_Experienced_User_Card_15018211_B.pdf from Illumnia Inc.
|
| Scan protocol |
Standard Illumina scaning protocol for DASL assays; see WGDASL_HT_Experienced_User_Card_15018211_B.pdf from Illumnia Inc.
|
| Description |
SAMPLE 23
|
| Data processing |
Data was extracted using BeadStudio, no background correction was applied. A constant value of 1 was added to the raw data then log2 transformed and quantile normalized using preprocessCore package in R. The data was further analyzed using limma package.
|
| |
|
| Submission date |
Apr 05, 2011 |
| Last update date |
Apr 01, 2012 |
| Contact name |
Adi Tarca |
| E-mail(s) |
atarca@med.wayne.edu
|
| Phone |
3135775305
|
| Organization name |
Wayne State University
|
| Department |
Perinatology Research Branch (NIH/NICHD)
|
| Street address |
3990 John R
|
| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48188 |
| Country |
USA |
| |
|
| Platform ID |
GPL13369 |
| Series (1) |
| GSE28387 |
Fetal blood transcriptome in maternal anti-fetal rejection |
|
