Similar studies for GEO DataSets (Select 200037754) - GEO DataSets

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Items: 20

Select item 2000377541.

Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Illumina)

(Submitter supplied) This study identified DNA methylation patterns that were associated with tumor subtypes, disease outcome, and distinct metabolome and gene expression patterns.

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
72 Samples

Download data: TXT

Series

Accession:: GSE37754

ID:: 200037754

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000390042.

Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Expression profiling by array; Methylation profiling by array

Platforms:: GPL13534 GPL6244
180 Samples

Download data: CEL

Series

Accession:: GSE39004

ID:: 200039004

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Select item 2000377513.

Molecular Profiles of Human Breast Cancer and Their Association with Tumor Subtypes and Disease Prognosis (Affymetrix)

(Submitter supplied) This study identified DNA methylation patterns that were associated with tumor subtypes, disease outcome, and distinct metabolome and gene expression patterns.

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL6244
108 Samples

Download data: CEL

Series

Accession:: GSE37751

ID:: 200037751

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Select item 2000805374.

Next Generation Sequencing Analysis of ADHFE1 and vector control Transcriptomes in breast cancer cells

(Submitter supplied) Our study represents a detailed analysis of MCF10A and MCF7 transcriptomes, with biologic replicates, generated by RNA-seq technology

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
32 Samples

Download data: TXT

Series

Accession:: GSE80537

ID:: 200080537

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Select item 2001179245.

RNA sequencing of RRM2 knockdown in C4-2 cells

(Submitter supplied) Human prostate cancer C4-2 cells transfected with siRNAs (siNS and siRRM2). Knockdown were confirm by westernblot or qPCR. Transfected cells were prepared for RNA-seq.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
4 Samples

Download data: XLSX

Series

Accession:: GSE117924

ID:: 200117924

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Select item 2001179236.

RNA sequencing of RRM2 overexpressing in PC-3 cells

(Submitter supplied) Human prostate cancer PC-3 cells stably overexpress RRM2. Overexpression of RRM2 were confirm by westernblot or qPCR. Transfected cells were prepared for RNA-seq.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
4 Samples

Download data: XLSX

Series

Accession:: GSE117923

ID:: 200117923

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Select item 2001179227.

RNA sequencing of RRM2 overexpressing in LNCaP cells

(Submitter supplied) Human prostate cancer LNCaP cells stably overexpress RRM2. Overexpression of RRM2 were confirm by westernblot or qPCR. Transfected cells were prepared for RNA-seq.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
4 Samples

Download data: XLSX

Series

Accession:: GSE117922

ID:: 200117922

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Select item 2001179218.

RNA sequencing of COH29 treatment in C4-2 cells

(Submitter supplied) Human prostate cancer C4-2 cells treated with COH29 and DMSO. Cells were treated with DMSO, 10uM or 20 uM COH29 for 48 hours. Cells were prepared for RNA-seq.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
6 Samples

Download data: XLSX

Series

Accession:: GSE117921

ID:: 200117921

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Select item 2000342919.

Gene expression profiling of Akt3 over-expressing breast cancer cells after estrogen and tamoxifen treatment

(Submitter supplied) The aim of this study is to identify the differentially expressed genes in upon Akt3 over-expression after estrogen and tamoxifen treatment.

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL4133
7 Samples

Download data: TXT

Series

Accession:: GSE34291

ID:: 200034291

Select item 20016162810.

Single-cell analysis of accessible chromatin using scATAC-seq and transcriptome analysis using RNA-seq in human mammary epithelial cells

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:: GPL21290 GPL18573
306 Samples

Download data

Series

Accession:: GSE161628

ID:: 200161628

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Select item 20016162711.

Transcriptome analysis using RNA-seq in human mammary epithelial cells

(Submitter supplied) Epigenome delineates lineage-specific transcriptional programs and restricts cell plasticity to prevent non-physiological cell fate transitions. Although cell diversification fosters tumor evolution and therapy resistance, upstream mechanisms that regulate the stability and plasticity of cancer epigenome remain elusive. Here, we show that 2-hydroxyglutarate (2HG) not only suppresses DNA repair but also mediates high-plasticity chromatin landscape. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21290
18 Samples

Download data: TXT

Series

Accession:: GSE161627

ID:: 200161627

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Select item 20013541212.

Single-cell analysis of accessible chromatin in human mammary epithelial cells using scATAC-seq [scATAC-seq]

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL18573
288 Samples

Download data: BED

Series

Accession:: GSE135412

ID:: 200135412

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Select item 20020975713.

The oncometabolite D-2HG alters T cell metabolism to impair CD8+ T cell function

(Submitter supplied) The tumor-derived oncometabolite D-2HG impairs CD8+ T cell function through a novel metabolic target

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19057
9 Samples

Download data: CSV

Series

Accession:: GSE209757

ID:: 200209757

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Select item 20008719014.

The anti-leukemic effect of R-2HG depends on its acting as an m6A mRNA modifier-M6A Seq

(Submitter supplied) m6A-seq in NOMO-1, MA9.3RAS and MA9.3ITD cells with or without R-2HG treatment.

Organism:: Homo sapiens

Type:: Other

Platform:: GPL16791
20 Samples

Download data: BW

Series

Accession:: GSE87190

ID:: 200087190

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Select item 20008718915.

The anti-leukemic effect of R-2HG depends on its acting as an m6A mRNA modifier-RNA Seq-PBS / R-2HG treatment

(Submitter supplied) RNA-seq from R-2HG sensitive leukemia cells treated with R-2HG or PBS.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16791
12 Samples

Download data: XLS

Series

Accession:: GSE87189

ID:: 200087189

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Select item 20008718716.

The anti-leukemic effect of R-2HG depends on its acting as an m6A mRNA modifier-RNA Seq-Resistant, sensitive and healthy control

(Submitter supplied) To identify the potential genes/signaling pathways related to R-2HG sensitivity in leukemia cells.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16791
13 Samples

Download data: TXT

Series

Accession:: GSE87187

ID:: 200087187

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Select item 20002591517.

Gene expression data for two xenograft models representing luminal-like and basal-like breast cancer

(Submitter supplied) Choline (reference 1) and glucose (reference 2) was studied using HR MAS MR spectroscopy data and 105 and 38 gene transcripts were selected respectively from the microarray data to study differences between two xenograft models. Reference 1: Moestue SA et al, Distinct choline metabolic profiles are associated with differences in gene expression for basal-like and luminal-like breast cancer xenograft models, BMC Cancer 2010 Aug 17;10:433 (PMID: 20716336). more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL6848
23 Samples

Download data: TXT

Series

Accession:: GSE25915

ID:: 200025915

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Select item 20011711718.

RNA-seq analysis comparing gene expression in Drosophila sea mutants and controls

(Submitter supplied) The goal of this study was to determine how decreased mitochondrial citrate export influences gene expression in Drosophila larvae. RNA was isolated from Drosopohila sea mutants, which exhibiti decreased mitochondrial citrate transport activity, and a genetically-matched control strain during mid-L3 development.

Organism:: Drosophila melanogaster

Type:: Expression profiling by high throughput sequencing

Platform:: GPL19132
6 Samples

Download data: TXT

Series

Accession:: GSE117117

ID:: 200117117

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Select item 20009083019.

Integrative proteogenomic characterization of colorectal cancer cell lines and primary tumors

(Submitter supplied) Integrative analysis of global RNASeq and proteomic data comparing human colorectal cancer (CRC) cell lines to primary tumors and normal tissues.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11154
44 Samples

Download data: TXT

Series

Accession:: GSE90830

ID:: 200090830

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Select item 20009081420.

Exon array data for patient-matched primary and metastatic colorectal samples

(Submitter supplied) Samples were taken from surgically resected tumor specimens/metastases from patients with colorectal cancer. The expression profiles were determined using the Affymetrix GeneChip Human Exon 1.0 ST Array version 2.