Similar studies for GEO DataSets (Select 200004918) - GEO DataSets

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Items: 20

Select item 2000049181.

Microarray gene expression profiling of 27k cDNAs in 23 healthy porcine tissues

(Submitter supplied) Background. Gene expression microarrays have been intensively applied to screen for genes involved in specific biological processes of interest such as diseases or responses to environmental stimuli. For mammalian species, cataloging of the global gene expression profiles in large tissue collections under normal conditions have been focusing on human and mouse genomes but is lacking for the pig genome. more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL3608
46 Samples

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Series

Accession:: GSE4918

ID:: 200004918

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Select item 2000080932.

Differential Gene Expression Profile in Pig Adipose Tissue Treated with/without Clenbuterol

(Submitter supplied) Background Clenbuterol, a beta-agonist, can dramatically reduce pig adipose accumulation at high dosages. However, it has been banned in pig production because people who eat pig products treated with clenbuterol can be poisoned by the clenbuterol residues. To understand the molecular mechanism for this fat reduction, cDNA microarray, real-time PCR, two-dimensional electrophoresis and mass spectra were used to study the differential gene expression profiles of pig adipose tissues treated with/without clenbuterol. more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL5374
8 Samples

Download data: GPR

Series

Accession:: GSE8093

ID:: 200008093

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Select item 2000023353.

Gene expression in normal tissues to validate the first generation porcine oligonucleotide microarray

(Submitter supplied) Lung, liver, muscle (Semitendinosus), small intestine (duodenum; approximately 5 cm from stomach) were collected from six cross-bred white pigs (three 15 week old and three 17 week old). Total RNAs were isolated from these tissues to study gene expression by using the first generation of porcine long oligonucleotide microarray. In the experimental design, tissue samples from the six animals were assigned to six loops (three for younger animals and three for older animals). more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL1881
24 Samples

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Series

Accession:: GSE2335

ID:: 200002335

Select item 1000161884.

Operon Array-Ready 29K Oligo Sets for the Pig Genome Version 1.0 and the Pig Genome Oligo Extension Set Version 1.0

(Submitter supplied) Zhao SH, Recknor J, Lunney JK, Nettleton D, Kuhar D, Orley S, Tuggle CK: Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in the pig.Zhao SH, Recknor J, Lunney JK, Nettleton D, Kuhar D, Orley S, Tuggle CK., Genomics. 2005 Nov;86(5):618-25. Protocol: Oligonucleotides were printed in duplicate on epoxide slides by operon. Operon probes are designed from The TIGR Gene Index Database SsGI Release 5.0 released 10/1/02. more...

Organism:: Sus scrofa

1 Series
18 Samples

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Platform

Accession:: GPL16188

ID:: 100016188

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Select item 2000004565.

Porcine brain library whole brain vs whole brain

(Submitter supplied) series of experiments assesing false positive and background of pig brain library (PBL) microarray Keywords = porcine brain, pig brain Keywords: repeat sample

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL336
2 Samples

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Series

Accession:: GSE456

ID:: 200000456

Select item 2000021946.

Normal_human_tissues_genomic_controls

(Submitter supplied) Array hybridizations profiling diverse human tissues; for each array the human tissue RNA is hybridized against a universal reference RNA. Experiments 1-3 are replicates of universal reference RNA vs. genomic DNA hybridizations, used to estimate transcript abundance. Arrays 4-8 are tissue RNA vs. genomic DNA hybridizations, carried out to evaluate the method for estimating transcript abundance (see manuscript for details). more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL1827
8 Samples

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Series

Accession:: GSE2194

ID:: 200002194

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Select item 2000021937.

Normal_human_tissues

(Submitter supplied) Array hybridizations profiling diverse human tissues; for each array the human tissue RNA is hybridized against a universal reference RNA. Series_type: Logical set Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: other

Organism:: Homo sapiens

Type:: Expression profiling by array

Datasets:: GDS1085 GDS1088
5 related Platforms
123 Samples

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Series

Accession:: GSE2193

ID:: 200002193

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Select item 10888.

Normal tissues of diverse types (SHDP)

Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.

Organism:: Homo sapiens

Type:: Expression profiling by array, log ratio, 4 tissue sets

Platform:: GPL1826
Series:: GSE2193
11 Samples

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DataSet

Accession:: GDS1088

ID:: 1088

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 10859.

Normal tissues of diverse types (SHBW)

Organism:: Homo sapiens

Type:: Expression profiling by array, log ratio, 20 tissue sets

Platform:: GPL1823
Series:: GSE2193
35 Samples

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DataSet

Accession:: GDS1085

ID:: 1085

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 20001012210.

Heart-muscle expression ratios in pig obtained by 454-sequencing, iTRAQ-based proteomics and cDNA microarrays

(Submitter supplied) The recent development within high-throughput technologies for expression profiling has allowed for parallel analysis of transcriptomes and proteomes in biological systems such as comparative analysis of transcript and protein levels of tissue regulated genes. Until now, such studies of have only included microarray or short length sequence tags for transcript profiling. Furthermore, most comparisons of transcript and protein levels have been based on absolute expression values from within the same tissue and not relative expression values based on tissue ratios. more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL6173
18 Samples

Download data: GPR

Series

Accession:: GSE10122

ID:: 200010122

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Select item 20000457711.

Early pig response to experimental infection with Actinobacillus pleuropneomuniae

(Submitter supplied) The objective of this study was to identify porcine genes which expression was affected by experimental infection with A. pleuropneumoniae within 24 hours after experimental challenge. Microarray experiments were conducted to reveal genes being significantly differentially expressed in infected versus non-infected lung tissue and in liver and lung lymph node tissue from three challenged versus two non-challenged animals. more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platforms:: GPL3585 GPL3594
16 Samples

Download data: CSV

Series

Accession:: GSE4577

ID:: 200004577

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Select item 10000600912.

Keck Glycine max 18kB cDNA array_prints 201-206

(Submitter supplied) see Vodkin et al., BMC Genomics 5:73 (2004) for details of cDNAs represented on the arrays and Thibaud-Nissen et al., Plant Physiol 132:118-136 (2003); Zou et al. Mol Plant Microbe Interat 18:1161-1174 (2005); Zabala and Vodkin, Plant Cell 17: 2619-2632 (2005) for use of cDNA arrays in soybean. Protocol: PCR amplified cDNA inserts printed with Genemachines Omnigrid

Organism:: Glycine max

6 Series
82 Samples

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Platform

Accession:: GPL6009

ID:: 100006009

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Select item 10000301513.

Keck Glycine max 18kA cDNA Prints101-108

(Submitter supplied) see Vodkin et al., BMC Genomics 5:73 (2004) for details of cDNAs represented and Thibaud-Nissan, et al., Plant Physiol 132: 118-136 (2003); and Zabala and Vodkin, Plant Cell 17: 2619-2632 (2005) for use of cDNA arrays in soybean Protocol: amplified cDNAs printed with Genemachines Omnigrid

Organism:: Glycine max

12 Series
191 Samples

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Platform

Accession:: GPL3015

ID:: 100003015

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Select item 20000141414.

Gene expression of bovine embryo

(Submitter supplied) The objective of the present study was to use our own fabricated bovine embryo cDNA microarray to profile genome-wide expression patterns of genes during the implantation period. Duplicate readings were obtained by hybridization of a Cy3/Cy5 probe mixture for each sample. Data normalization was performed the local background intensity of each array spot was smoothed by the local weight regression (lowess) smoother and subtracted from spot intensity data. more...

Organism:: Bos taurus

Type:: Expression profiling by array

Dataset:: GDS1003
Platform:: GPL1221
11 Samples

Download data: TIFF

Series

Accession:: GSE1414

ID:: 200001414

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Select item 100315.

Embryogenesis and early fetal development: time course

Expression profiling of embryos at various days of gestation up to 21 days and fetuses and fetal membranes at 27 and 28 days of gestation. Results provide insight into the regulation of embryonic, fetal, and fetal membrane differentiation.

Organism:: Bos taurus

Type:: Expression profiling by array, count, 7 development stage, 3 tissue sets

Platform:: GPL1221
Series:: GSE1414
11 Samples

Download data: TIFF

DataSet

Accession:: GDS1003

ID:: 1003

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 20003504216.

Development of a porcine (Sus scofa) embryo-specific microarray: array annotation and validation

(Submitter supplied) Background The domestic pig is an important livestock species for meat production worldwide and is becoming an established biomedical research model. As a result, there is a strong interest in the factors that affect the efficient production of viable embryos and offspring in this species using either in vivo or in vitro production methods. A limited understanding of the molecular mechanisms involved in this critical physiological process has inhibited our ability to fully elucidate these factors. more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL14925
2 Samples

Download data: GPR, TXT

Series

Accession:: GSE35042

ID:: 200035042

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Select item 20003415717.

EMPV1 technical repeat

(Submitter supplied) 2-4-8 cell porcine embryo technical repeat dye-swap for Agilent EMPV1 (4x44k Format)

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL14925
1 Sample

Download data: GPR

Series

Accession:: GSE34157

ID:: 200034157

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Select item 20000731418.

Expression data from non-infected and Salmonella Choleraesuis infected mesenteric lymph nodes

(Submitter supplied) To understand the host transcriptional response to S. enterica serovar Choleraesuis (S. Choleraesuis), the first generation Affymetrix porcine GeneChip® was used to identify differentially expressed genes in the mesenteric lymph nodes responding to infection at acute (8 hours (h), 24h, 48h post-inoculation (pi)) and chronic stages (21 days (d) pi) The objectives of this study were to identify and examine the stereotypical gene expression response within the host mesenteric lymph nodes to S. more...

Organism:: Sus scrofa

Type:: Expression profiling by array

Platform:: GPL3533
15 Samples

Download data: CEL, EXP

Series

Accession:: GSE7314

ID:: 200007314

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Select item 10000440419.

GUELPH Bovine 180 immune-endocrine microarray

(Submitter supplied) The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. more...

Organism:: Arabidopsis thaliana; Bos taurus

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Platform

Accession:: GPL4404

ID:: 100004404

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Select item 20000520820.

Analysis of gene expression profiling of normal retina and brain cortices

(Submitter supplied) Using a canine custom retinal cDNA microarray our aim is to identify normal gene expression profiling for retina and frontal, occipital and temporal brain cortices Keywords: retina-brain comparisons

Organism:: Canis lupus familiaris

Type:: Expression profiling by array

Platforms:: GPL3951 GPL3957
11 Samples

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Series

Accession:: GSE5208

ID:: 200005208

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