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Platform GPL14925 Query DataSets for GPL14925
Status Public on Jan 11, 2012
Title Agilent-031068 EmbryoGene Porcine Array Version 1 (EMPV1)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sus scrofa
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2514F
Support glass
 
Description EmbryoGENE Porcine Embryo microarray
Custom Microarray GE 4x44K with designID=031068
Specific array desgin from porcine preimplantation development
Arrays of this design have barcodes that begin with 16031068 or 2531068.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL18148.
 
Web link http://www.embryogene.ca
Contributor(s) Tsoi S, Zhou C
Submission date Nov 23, 2011
Last update date Jan 09, 2014
Contact name chi zhou
Organization name University of Wisconsin-Madison
Department Department of OB/Gyn
Lab Perinatal Research Lab
Street address 202 S. Park Street, PAB1, Meriter Hospital
City Madison
State/province WI
ZIP/Postal code 53715
Country USA
 
Samples (54) GSM843255, GSM861268, GSM861269, GSM951373, GSM951374, GSM951375 
Series (8)
GSE34157 EMPV1 technical repeat
GSE35042 Development of a porcine (Sus scofa) embryo-specific microarray: array annotation and validation
GSE38882 Comparative trascriptomic analysis between early-blastocyst and Hatched blastocyst

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence
GB_ACC GenBank Accession number
ORF ORF Name
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE REFSEQ GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE GB_ACC ORF SPOT_ID
556 263 80 (-)3xSLv1 neg CONTROL
775 262 151 (-)3xSLv1 neg CONTROL
824 262 53 (-)3xSLv1 neg CONTROL
1408 258 76 (-)3xSLv1 neg CONTROL
1778 256 16 (-)3xSLv1 neg CONTROL
2154 254 113 (-)3xSLv1 neg CONTROL
2240 253 112 (-)3xSLv1 neg CONTROL
2370 253 21 (-)3xSLv1 neg CONTROL
2391 252 150 (-)3xSLv1 neg CONTROL
2911 249 130 (-)3xSLv1 neg CONTROL
3154 248 153 (-)3xSLv1 neg CONTROL
3270 247 92 (-)3xSLv1 neg CONTROL
3350 247 101 (-)3xSLv1 neg CONTROL
4064 243 33 (-)3xSLv1 neg CONTROL
4080 243 1 (-)3xSLv1 neg CONTROL
4481 240 50 (-)3xSLv1 neg CONTROL
4641 239 70 (-)3xSLv1 neg CONTROL
4686 239 149 (-)3xSLv1 neg CONTROL
6457 229 7 (-)3xSLv1 neg CONTROL
6480 228 132 (-)3xSLv1 neg CONTROL

Total number of rows: 45220

Table truncated, full table size 8148 Kbytes.




Download family Format
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