txid41191[Organism:exp] - GEO DataSets

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Select item 2002734771.

Heat disrupts host-parasitoid interactions mediated by a viral symbiont

(Submitter supplied) High temperature events can disrupt species interactions, including those among hosts, symbionts, and natural enemies. Understanding the genetic and physiological processes underlying these disruptions is a critical scientific challenge in this era of anthropogenic climate change. We explore how high temperatures disrupt the interactions among an herbivorous insect host, Manduca sexta, its insect parasitoid, Cotesia congregata, and the parasitoid’s symbiotic virus. more...

Organism:: Manduca sexta

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34758
93 Samples

Download data: MATRIX

Series

Accession:: GSE273477

ID:: 200273477

Select item 2002021042.

Transcriptomic analysis of non-coding RNAs reveals the regulatory network of testicular fusion in Spodoptera litura

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Spodoptera litura

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL32223
18 Samples

Download data

Series

Accession:: GSE202104

ID:: 200202104

Select item 2002021023.

Transcriptomic analysis of non-coding RNAs reveals the regulatory network of testicular fusion in Spodoptera litura [miRNA-seq]

(Submitter supplied) Spodoptera litura (Lepidoptera: Noctuidae), which has a strong and rapid reproductive capacity, is a polyphagous pest with great destruction to many crops, causing economic loss to agricultural production worldwide. Its two testes began to fuse into a single one during the larva-to-pupa metamorphosis, which was favorable to the sperms development in our previous study. But the mechanism of testicular fusion is still unknown. more...

Organism:: Spodoptera litura

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL32223
9 Samples

Download data: FA, TXT

Series

Accession:: GSE202102

ID:: 200202102

Select item 2002019534.

Transcriptomic analysis of non-coding RNAs reveals the regulatory network of testicular fusion in Spodoptera litura [lncRNA-mRNA]

(Submitter supplied) Spodoptera litura (Lepidoptera: Noctuidae), which has a strong and rapid reproductive capacity, is a polyphagous pest with great destruction to many crops, causing economic loss to agricultural production worldwide. Its two testes fuse into a single one during the larva-to-pupa metamorphosis, which was favorable to the sperm development. However the mechanism of testicular fusion is still not fully understood. more...

Organism:: Spodoptera litura

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL32223
9 Samples

Download data: FA, TXT

Series

Accession:: GSE201953

ID:: 200201953

Select item 2002728045.

Bombyx mori UFBP1 regulates apoptosis and promotes BmNPV proliferation by affecting the expression of ER chaperone BIP

(Submitter supplied) Ubiquitin-fold modifier 1 (UFM1) is attached to protein substrates through the sequential activity of an E1 (UBA5)-E2 (UBC1)-E3 (UBL1) cascade. UFBP1 is a conserved UFL1-interacting protein in mammals. However, there is no study on UFBP1 in silkworm yet. In this study, we identified a UFBP1 ortholog in B. mori genome. Spatio-Temporal expression profiles showed that BmUFBP1 expression was highly in midgut, fatbody, and at the moth stage. more...

Organism:: Bombyx mori

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34106
6 Samples

Download data: XLS

Series

Accession:: GSE272804

ID:: 200272804

Select item 2002726706.

The transcriptional dynamics of Ophryocystis elektroscirrha across its host's metamorphosis

(Submitter supplied) The objective of this study was to quantify patterns of transcriptional differentiation that Ophryocystis elektroscirrha undergoes throughtout its host's metamorphosis.

Organism:: Danaus plexippus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34095
46 Samples

Download data: TSV

Series

Accession:: GSE272670

ID:: 200272670

Select item 2002711877.

Small RNA sequencing based identification of miRNAs in Cnaphalocrocis medinalis

(Submitter supplied) This study analyzed the expression profiles of miRNAs in fifth instar larvae and pupae of the rice leaf folder (Cnaphalocrocis medinalis) using high-throughput sequencing technology. Furthermore, it predicted the target genes of significantly differentially expressed miRNAs and performed functional enrichment analysis.

Organism:: Cnaphalocrocis medinalis

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL34666
6 Samples

Download data: XLS

Series

Accession:: GSE271187

ID:: 200271187

Select item 2002166378.

Molecular Insights into the Inhibition of Proton-Activated Chloride Channel by Transfer RNA

(Submitter supplied) The proton-activated chloride (PAC) channel (also known as acid-sensitive outwardly rectifying anion channel, ASOR) plays a critical role in acid-induced cell death and endocytosis. However, little is known about the regulatory factors and binding partners of PAC. In this study, we discovered that transfer RNA (tRNA) interacts directly with PAC as an unexpected binding partner. Using cryo-electron microscopy, we determined that two PAC trimers and one co-purified tRNA molecule form a stable complex via a highly conserved KR motif, representing the closed conformation. more...

Organism:: Spodoptera frugiperda; Homo sapiens

Type:: Other

Platforms:: GPL18573 GPL27985
2 Samples

Download data: TXT

Series

Accession:: GSE216637

ID:: 200216637

PubMed Similar studies

Select item 2001584669.

Spongy moth gene expression during female pupal development

(Submitter supplied) Female adult spongy moths vary in their flight capacity depending upon their origin and subspecies. Asian spongy moth (Lymantria dispar asiatica) females (such as the RM strain here) can fly whereas European spongy moth (Lymantria dispar dispar) females cannot (such as the CT strain here). We hypothesized that the genetic origins of these differences in flight capacity would be reflected in differences in gene expression during metamorphosis (the pupal stage). more...

Organism:: Lymantria dispar asiatica; Lymantria dispar dispar

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL29180 GPL29179
30 Samples

Download data: FA, TXT

Series

Accession:: GSE158466

ID:: 200158466

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20024153610.

The molecular basis of scale development highlighted by a single-cell atlas of Bicyclus anynana butterfly pupal forewings

(Submitter supplied) Butterfly wings display a diversity of cell types, including large polyploid scale cells, yet the molecular basis of such diversity is poorly understood. To explore scale cell diversity at a transcriptomic level, we employ single-cell RNA sequencing of ∼5,200 large cells (>6 μm) from 22.5- to 25-h male pupal forewings of the butterfly Bicyclus anynana. Using unsupervised clustering, followed by in situ hybridization, immunofluorescence, and CRISPR-Cas9 editing of candidate genes, we annotate various cell types on the wing. more...

Organism:: Bicyclus anynana

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33708
1 Sample

Download data: RDS

Series

Accession:: GSE241536

ID:: 200241536

Select item 20026047811.

Impaired innate and adaptive immune responses to BNT162b2 SARSCoV-2 vaccination in systemic lupus erythematosus [CTD]

(Submitter supplied) We measued IgG autoantibodies associated with Connective Tissue Diseases (CTDs) and Anti-Cytokine Antibodies (ACA) in SLE and healthy controls who received the BNT162b2 vaccine.

Organism:: Escherichia coli; Spodoptera frugiperda; Bos taurus; Triticum aestivum; Capra hircus; Homo sapiens; Sus scrofa

Type:: Protein profiling by protein array

Platform:: GPL34257
102 Samples

Download data: TXT, XLSX

Series

Accession:: GSE260478

ID:: 200260478

PubMed Full text in PMC Similar studies

Select item 20022391312.

Pol II pausing is a milestone on the road to complex animals

(Submitter supplied) PRO-seq experiments in multiple organisms. Also, PRO-seq experiment of Nelfb and Nelfe degron mESC in serum/LIF with or without dTAG-13.

Organism:: Daphnia pulex; Strongylocentrotus purpuratus; Sphaeroforma arctica; Haloferax mediterranei; Dryas iulia; Nematostella vectensis; Dictyostelium discoideum; Capsaspora owczarzaki; Creolimax fragrantissima; Escherichia coli; Mus musculus; Perkinsus marinus

Type:: Other

12 related Platforms
46 Samples

Download data

Series

Accession:: GSE223913

ID:: 200223913

Select item 20025338913.

The role of gene duplication in shaping divergent patterns of gene expression across a complex life cycle

(Submitter supplied) The objective of this study was to explore the transcriptional basis of the holometabolous development of Danaus plexippus (the monarch butterfly), which we reasoned would lend insight into how complex life cycles evolve.

Organism:: Danaus plexippus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL34095
50 Samples

Download data: TXT

Series

Accession:: GSE253389

ID:: 200253389

Select item 20024755814.

Identification and profiling of microRNAs in the developmental transitions of Spodoptera frugiperda

(Submitter supplied) MicroRNAs (miRNAs) are endogenous small noncoding RNAs (18–25 nt) that are involved in many physiological processes including development, cancer, immunity, apoptosis and host-microbe interactions through posttranscriptional regulation of gene expression. In this study, we measured the profile of small RNAs over the developmental transitions of Spodoptera frugiperda from egg to adult. We identified 741 miRNAs, including 493 known and 248 novel miRNAs. more...

Organism:: Spodoptera frugiperda

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL25030
18 Samples

Download data: XLS

Series

Accession:: GSE247558

ID:: 200247558

Select item 20024613415.

Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes

(Submitter supplied) RNA-guided endonucleases form the crux of diverse biological processes and technologies, including adaptive immunity, transposition, and genome editing. Some of these enzymes are components of insertion sequences (IS) in the IS200/IS605 and IS607 transposon families. Both IS families encode a TnpA transposase and TnpB nuclease, an RNA-guided enzyme ancestral to CRISPR-Cas12. In eukaryotes and their viruses, TnpB homologs occur as two distinct types, Fanzor1 and Fanzor2. more...

Organism:: Escherichia coli; Spodoptera frugiperda

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL33862 GPL16085
6 Samples

Download data: BW, FASTA

Series

Accession:: GSE246134

ID:: 200246134

PubMed Full text in PMC Similar studies

Select item 20024710716.

RNA m6A methylation suppresses insect juvenile hormone degradation to minimize fitness costs in response to a pathogenic attack

(Submitter supplied) Bioinsecticides and transgenic crops based on the bacterial pathogen Bacillus thuringiensis (Bt) can effectively control diverse agricultural insect pests, nevertheless, insect resistance evolution without causing obvious fitness costs has seriously eroded the sustainable use of these Bt products. Recently, we have discovered that an increased titer of juvenile hormone (JH) favors an insect host (Plutella xylostella) to enhance fitness whilst resisting the Bt pathogen, however, the underlying regulatory mechanisms of the increased JH titer is obscure. more...

Organism:: Plutella xylostella

Type:: Other

Platform:: GPL28843
12 Samples

Download data: TXT

Series

Accession:: GSE247107

ID:: 200247107

PubMed Full text in PMC Similar studies

Select item 20023435117.

Effect of sulforaphane on gene expression in Spodoptera exigua and Trichoplusia ni

(Submitter supplied) Cruciferous plants produce sulforaphane (SFN), an inhibitor of nuclear histone deacetylases (HDACs). In humans and other mammals, the consumption of SFN alters enzyme activities, DNA-histone binding, and gene expression within minutes. However, the ability of SFN to act as a HDAC inhibitor in nature, disrupting the epigenetic machinery of insects feeding on these plants, has not been explored. Here, we investigate the effect of SFN, as well as the pharmaceutical HDAC inhibitor Trichostatin A (TSA), consumed in the diet in the generalist grazer Spodoptera exigua and in the co-evolved specialist feeder Trichoplusia ni. more...