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| Status |
Public on Jun 03, 2024 |
| Title |
Spongy moth gene expression during female pupal development |
| Organisms |
Lymantria dispar dispar; Lymantria dispar asiatica |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Female adult spongy moths vary in their flight capacity depending upon their origin and subspecies. Asian spongy moth (Lymantria dispar asiatica) females (such as the RM strain here) can fly whereas European spongy moth (Lymantria dispar dispar) females cannot (such as the CT strain here). We hypothesized that the genetic origins of these differences in flight capacity would be reflected in differences in gene expression during metamorphosis (the pupal stage). To test this, we compared the gene expression at days 1, 3, 5, 8, and 11 of pupal development of female pupae from CT and RM strains.
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| Overall design |
Overall there are 30 female pupa samples, two strains (RM and CT), sampled at days 1, 3, 5, 8, and 11. Each sample type has 3 biological replicates (individual pupae).
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| Contributor(s) |
Keeling CI, Béliveau C, Keena MA, Cusson M |
| Citation(s) |
38822259 |
| BioProject |
PRJNA664407 |
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| Submission date |
Sep 23, 2020 |
| Last update date |
Jun 03, 2024 |
| Contact name |
Christopher Ian Keeling |
| Organization name |
Natural Resources Canada
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| Department |
Canadian Forest Service
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| Lab |
Laurentian Forestry Centre
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| Street address |
1055 rue du PEPS
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| City |
Quebec City |
| State/province |
QC |
| ZIP/Postal code |
G1V 4C7 |
| Country |
Canada |
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| Platforms (2) |
| GPL29179 |
Ion Torrent Proton (Lymantria dispar dispar) |
| GPL29180 |
Ion Torrent Proton (Lymantria dispar asiatica) |
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| Samples (30)
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| GSM4801253 |
Gypsy Moth Strain CT, Day 1, Replicate 1 |
| GSM4801254 |
Gypsy Moth Strain CT, Day 5, Replicate 3 |
| GSM4801255 |
Gypsy Moth Strain RM, Day 1, Replicate 1 |
| GSM4801256 |
Gypsy Moth Strain RM, Day 5, Replicate 3 |
| GSM4801257 |
Gypsy Moth Strain CT, Day 1, Replicate 2 |
| GSM4801258 |
Gypsy Moth Strain CT, Day 8, Replicate 1 |
| GSM4801259 |
Gypsy Moth Strain RM, Day 1, Replicate 2 |
| GSM4801260 |
Gypsy Moth Strain RM, Day 8, Replicate 1 |
| GSM4801261 |
Gypsy Moth Strain CT, Day 1, Replicate 3 |
| GSM4801262 |
Gypsy Moth Strain CT, Day 8, Replicate 2 |
| GSM4801263 |
Gypsy Moth Strain RM, Day 1, Replicate 3 |
| GSM4801264 |
Gypsy Moth Strain RM, Day 8, Replicate 2 |
| GSM4801265 |
Gypsy Moth Strain CT, Day 3, Replicate 1 |
| GSM4801266 |
Gypsy Moth Strain CT, Day 8, Replicate 3 |
| GSM4801267 |
Gypsy Moth Strain RM, Day 3, Replicate 1 |
| GSM4801268 |
Gypsy Moth Strain RM, Day 8, Replicate 3 |
| GSM4801269 |
Gypsy Moth Strain CT, Day 3, Replicate 2 |
| GSM4801270 |
Gypsy Moth Strain CT, Day 11, Replicate 1 |
| GSM4801271 |
Gypsy Moth Strain RM, Day 3, Replicate 2 |
| GSM4801272 |
Gypsy Moth Strain RM, Day 11, Replicate 1 |
| GSM4801273 |
Gypsy Moth Strain CT, Day 3, Replicate 3 |
| GSM4801274 |
Gypsy Moth Strain CT, Day 11, Replicate 2 |
| GSM4801275 |
Gypsy Moth Strain RM, Day 3, Replicate 3 |
| GSM4801276 |
Gypsy Moth Strain RM, Day 11, Replicate 2 |
| GSM4801277 |
Gypsy Moth Strain CT, Day 5, Replicate 1 |
| GSM4801278 |
Gypsy Moth Strain CT, Day 11, Replicate 3 |
| GSM4801279 |
Gypsy Moth Strain RM, Day 5, Replicate 1 |
| GSM4801280 |
Gypsy Moth Strain RM, Day 11, Replicate 3 |
| GSM4801281 |
Gypsy Moth Strain CT, Day 5, Replicate 2 |
| GSM4801282 |
Gypsy Moth Strain RM, Day 5, Replicate 2 |
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| Relations |
| SRA |
SRP283905 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE158466_PROJECT_Cusson_pupae_flight_genewise_representative_transcripts.fa.gz |
15.7 Mb |
(ftp)(http) |
FA |
| GSE158466_PROJECT_Cusson_pupae_flight_vst_counts.txt.gz |
3.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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