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Accession: PRJEB52430 ID: 855789

Rubiaceae and Primulaceae leaf symbiosis

Metagenome assembly, analysis, and comparison of leaf endophyte genomes from Rubiaceae and Primulaceae plant species.

Accession	PRJEB52430
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Danneels B et al., "Cyclitol metabolism is a central feature of Burkholderia leaf symbionts.", Environ Microbiol, 2023 Feb;25(2):454-472
Submission	Registration date: 5-Jul-2022 inrae toulouse

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3410
WGS master	15
SRA Experiments	23
Protein Sequences	47572
Publications
PubMed	1
Other datasets
BioSample	38
Assembly	15

Assembly details:

Assembly level

Number of Assemblies

Contig

15
15

Assembly	Level	WGS	BioSample	Taxonomy
GCA_940590155.1		CALNVO000000000	SAMEA14269239	Candidatus Burkholderia crenata
GCA_940590175.1		CALNVN000000000	SAMEA14269240	uncultured Caballeronia sp.
GCA_940590075.1		CALNVC000000000	SAMEA14269238	uncultured Caballeronia sp.
GCA_940588625.1		CALNPU000000000	SAMEA14269237	uncultured Caballeronia sp.
GCA_940590165.1		CALNVM000000000	SAMEA14269241	uncultured Paraburkholderia sp.
GCA_940747215.1		CALNWS000000000	SAMEA14269244	uncultured Paraburkholderia sp.
GCA_940746715.1		CALNWN000000000	SAMEA14269251	uncultured Paraburkholderia sp.
GCA_940746875.1		CALNWP000000000	SAMEA14269249	uncultured Paraburkholderia sp.
GCA_940740205.1		CALNWM000000000	SAMEA14269248	uncultured Paraburkholderia sp.
GCA_940739445.1		CALNWL000000000	SAMEA14269246	uncultured Paraburkholderia sp.
GCA_940590085.1		CALNVE000000000	SAMEA14269243	uncultured Paraburkholderia sp.
GCA_940746745.1		CALNWQ000000000	SAMEA14269250	uncultured Paraburkholderia sp.
GCA_940746945.1		CALNWR000000000	SAMEA14269245	uncultured Paraburkholderia sp.
GCA_940746845.1		CALNWO000000000	SAMEA14269247	uncultured Paraburkholderia sp.
GCA_940590185.1		CALNVP000000000	SAMEA14269242	uncultured Paraburkholderia sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	40
Data volume, Mbytes	13247

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Rubiaceae and Primulaceae leaf symbiosis
Rubiaceae and Primulaceae leaf symbiosis
Rubiaceae and Primulaceae leaf symbiosis

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