Vmac symbiont

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Result Filters

Organism: uncultured Paraburkholderia sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia; environmental samples

Attributes

collection date	2020-03
broad-scale environmental context	Temperate Biome
local-scale environmental context	Grassland
environmental medium	Leaf
geographic location	South Africa
investigation type	metagenome
isolation source	Vangueria macrocalyx leaf
project name	Rubiaceae and Primulaceae leaf symbionts
sample name	Vmac symbiont
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2022-07-01
ENA-LAST-UPDATE	2022-07-01
External Id	SAMEA14269244
INSDC center alias	INRAE Toulouse
INSDC center name	inrae toulouse
INSDC first public	2022-07-01T12:20:36Z
INSDC last update	2022-07-01T12:20:36Z
INSDC status	public
Submitter Id	Vmac symbiont
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S,16S and 5S rRNA genes and at least 18 tRNAs.
assembly software	metaSpades v3.15, default settings
binning parameters	Sequence homology, nucleotide composition, coverage, marker genes
binning software	Autometa
completeness score	90.6
completeness software	BUSCO
contamination score	0.43
geographic location (latitude)	30.97
geographic location (longitude)	-25.44
metagenomic source	leaf metagenome
sample derived from	ERS11817162
sequencing method	Illumina
taxonomic identity marker	23S, multi-marker, whole-genome (ANI)

BioProject: PRJEB52430 Rubiaceae and Primulaceae leaf symbiosis
Retrieve all samples from this project

Vmac symbiont
Vmac symbiont

biosample
MAG: uncultured Paraburkholderia sp. isolate VmadSA symbiont, whole genome shotg...
MAG: uncultured Paraburkholderia sp. isolate VmadSA symbiont, whole genome shotgun sequencing project
gi|2270729208|emb|CALNWR000000000.1 WR010000000

Nucleotide
armadillo repeat-containing protein 10 isoform X11 [Homo sapiens]
armadillo repeat-containing protein 10 isoform X11 [Homo sapiens]
gi|530386496|ref|XP_005250685.1|

Protein
armadillo repeat-containing protein 10 isoform X10 [Homo sapiens]
armadillo repeat-containing protein 10 isoform X10 [Homo sapiens]
gi|2217368754|ref|XP_047276874.1|

Protein
PREDICTED: Homo sapiens armadillo repeat containing 10 (ARMC10), transcript vari...
PREDICTED: Homo sapiens armadillo repeat containing 10 (ARMC10), transcript variant X7, mRNA
gi|2217368748|ref|XM_047420916.1|

Nucleotide

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