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Avir symbiont

Identifiers
BioSample: SAMEA14269239; SRA: ERS11871884
Organism
Candidatus Burkholderia crenata
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia
Attributes
collection date2021-02
broad-scale environmental contextTemperate Biome
local-scale environmental contextBotanic Garden
environmental mediumLeaf
geographic locationUnited Kingdom
investigation typemetagenome
isolation sourceArdisia virens leaf
project nameRubiaceae and Primulaceae leaf symbionts
sample nameAvir symbiont
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2022-07-01
ENA-LAST-UPDATE2022-07-01
External IdSAMEA14269239
INSDC center aliasINRAE Toulouse
INSDC center nameinrae toulouse
INSDC first public2022-07-01T12:20:36Z
INSDC last update2022-07-01T12:20:36Z
INSDC statuspublic
Submitter IdAvir symbiont
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S,16S and 5S rRNA genes and at least 18 tRNAs.
assembly softwaremetaSpades v3.15, default settings
binning parametersSequence homology, nucleotide composition, coverage, marker genes
binning softwareAutometa
completeness score88.4
completeness softwareBUSCO
contamination score0.8
geographic location (latitude)-3.21
geographic location (longitude)55.97
metagenomic sourceleaf metagenome
sample derived fromERS11817151
sequencing methodIllumina
taxonomic identity marker18S, multi-marker, whole-genome (ANI)
Description

Symbiont MAG of Ardisia virens

BioProject
PRJEB52430 Rubiaceae and Primulaceae leaf symbiosis
Retrieve all samples from this project

Submission
EBI; 2022-07-06
Accession:
SAMEA14269239
ID:
29516687

BioProject Nucleotide

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