Vpy1 symbiont

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Result Filters

Organism: uncultured Paraburkholderia sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia; environmental samples

Attributes

collection date	2020-03
broad-scale environmental context	Temperate Biome
local-scale environmental context	Grassland
environmental medium	Leaf
geographic location	South Africa
investigation type	metagenome
isolation source	Vangueria pygmaea leaf
project name	Rubiaceae and Primulaceae leaf symbionts
sample name	Vpy1 symbiont
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2022-07-01
ENA-LAST-UPDATE	2022-07-01
External Id	SAMEA14269248
INSDC center alias	INRAE Toulouse
INSDC center name	inrae toulouse
INSDC first public	2022-07-01T12:20:36Z
INSDC last update	2022-07-01T12:20:36Z
INSDC status	public
Submitter Id	Vpy1 symbiont
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S,16S and 5S rRNA genes and at least 18 tRNAs.
assembly software	metaSpades v3.15, default settings
binning parameters	Sequence homology, nucleotide composition, coverage, marker genes
binning software	Autometa
completeness score	99.4
completeness software	BUSCO
contamination score	0.43
geographic location (latitude)	28.53
geographic location (longitude)	-25.66
metagenomic source	leaf metagenome
sample derived from	ERS11817166
sequencing method	Illumina
taxonomic identity marker	27S, multi-marker, whole-genome (ANI)