Vsou symbiont

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Result Filters

Organism: uncultured Paraburkholderia sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia; environmental samples

Attributes

collection date	2020-03
broad-scale environmental context	Temperate Biome
local-scale environmental context	Grassland
environmental medium	Leaf
geographic location	South Africa
investigation type	metagenome
isolation source	Vangueria soutpansbergensis leaf
project name	Rubiaceae and Primulaceae leaf symbionts
sample name	Vsou symbiont
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2022-07-01
ENA-LAST-UPDATE	2022-07-01
External Id	SAMEA14269251
INSDC center alias	INRAE Toulouse
INSDC center name	inrae toulouse
INSDC first public	2022-07-01T12:20:36Z
INSDC last update	2022-07-01T12:20:36Z
INSDC status	public
Submitter Id	Vsou symbiont
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S,16S and 5S rRNA genes and at least 18 tRNAs.
assembly software	metaSpades v3.15, default settings
binning parameters	Sequence homology, nucleotide composition, coverage, marker genes
binning software	Autometa
completeness score	94.3
completeness software	BUSCO
contamination score	0.33
geographic location (latitude)	30.97
geographic location (longitude)	-25.44
metagenomic source	leaf metagenome
sample derived from	ERS11817169
sequencing method	Illumina
taxonomic identity marker	30S, multi-marker, whole-genome (ANI)

BioProject: PRJEB52430 Rubiaceae and Primulaceae leaf symbiosis
Retrieve all samples from this project

Vsou symbiont
Vsou symbiont

biosample
PREDICTED: Homo sapiens armadillo repeat containing 10 (ARMC10), transcript vari...
PREDICTED: Homo sapiens armadillo repeat containing 10 (ARMC10), transcript variant X10, mRNA
gi|2462616443|ref|XM_054359165.1|

Nucleotide
PREDICTED: Homo sapiens armadillo repeat containing 10 (ARMC10), transcript vari...
PREDICTED: Homo sapiens armadillo repeat containing 10 (ARMC10), transcript variant X4, mRNA
gi|2217368744|ref|XM_017012684.3|

Nucleotide

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