Human Microbiome Project (HMP) Reference Genomes (ID 28331) - BioProject

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Accession: PRJNA28331 ID: 28331

Human Microbiome Project (HMP) Reference Genomes

Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

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This project is a component of the NIH Human Microbiome Project (HMP) Roadmap Project

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3 additional projects are components of the NIH Human Microbiome Project (HMP) Roadmap Project.

Over 1000 microbes from cultured and uncultured bacteria that have been previously isolated from the human body, plus several non-bacterial microbes, will be sequenced. Combined with existing and other planned efforts, the total reference collection could reach 3000 genomes. These sequences will provide a benchmark for analysis of the sequence data generated in the 16S rRNA Sequencing and Metagenomes components of HMP.

Accession	PRJNA28331
Type	Umbrella project (Subtype:Funding initiative)
Publications (total 3) Less...	Ribeiro FJ et al., "Finished bacterial genomes from shotgun sequence data.", Genome Res, 2012 Nov;22(11):2270-7 More... Ribeiro FJ et al., "Finished bacterial genomes from shotgun sequence data.", Genome Res, 2012 Nov;22(11):2270-7 Human Microbiome Jumpstart Reference Strains Consortium et al., "A catalog of reference genomes from the human microbiome.", Science, 2010 May 21;328(5981):994-9 Chain PS et al., "Genomics. Genome project standards in a new era of sequencing.", Science, 2009 Oct 9;326(5950):236-7 Less...
Submission	Registration date: 10-Jan-2008 NIH Human Microbiome Consortium
NCBI Links	NCBI Project: HMP Roadmap Get Finished Reference Genomes that have the comment More... NCBI Project: HMP Roadmap Get Finished Reference Genomes that have the comment Get Noncontiguous Finished Reference Genomes Get Annotation-directed Improvement Reference Genomes Get Improved High-Quality Draft Reference Genomes Get High-Quality Draft Reference Genomes Get Standard Draft Reference Genomes Less...
Related Resources	HMP Reference Genomes NIH HMP DACC

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	379251
WGS master	2288
Genomic DNA	541
Map	3
SRA Experiments	4683
Capillary Traces (Trace Archive)	1
Protein Sequences	6414902
Publications
PubMed	49
PMC	26
Other datasets
BioSample	3508
Assembly	2362

SRA Data Details

Parameter	Value
Data volume, Gbases	2,715
Data volume, Tbytes	2.15

Human Microbiome Project (HMP) Reference Genomes encompasses the following 2948 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Chromosomes
Scaffolds
Contigs
SRA or Trace
No data links
Total

31
14
1878
386
493
145
2947

BioProject accession	Assembly level	Name	Title
PRJNA33011	Scaffolds	Abiotrophia defectiva ATCC 49176	Reference genome for the Human Microbiome Project (Washington University Genome...)
PRJNA269830	Scaffolds	Abiotrophia sp. HMSC24B09	HMP reference genome (The Genome Institute at Washington...)
PRJNA197021	SRA or Trace	Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0106	HMP reference genome (Broad Institute)
PRJNA197022	SRA or Trace	Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0107	HMP reference genome (Broad Institute)
PRJNA197024	SRA or Trace	Acetanaerobacterium sp. hmp_mda_pilot_jcvi_0109	HMP reference genome (Broad Institute)

List all 2947 'Genome sequencing' projects...

transcriptome

BioProject accession	Organism	Title
PRJNA72979	Exophiala dermatitidis NIH/UT8656	Reference transcriptome for Human Microbiome Project (Broad Institute)

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Human Microbiome Project (HMP) Reference Genomes

Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

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