Helicobacter canadensis MIT 98-5491 (ID 30071) - BioProject

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Accession: PRJNA30071 ID: 30071

Helicobacter canadensis MIT 98-5491

reference genome for the Human Microbiome Project

See Genome Information for Helicobacter canadensis

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This project is a component of the Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP)

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2 additional projects are related by organism.

2947 additional projects are components of the Genomes of microorganisms that have been isolated in and on the human body, to be used as Reference Genomes for the Human Microbiome Project (HMP).

Helicobacter canadensis MIT 98-5491. Helicobacter canadensis MIT 98-5491 (ATCC 700968) was isolated from a human with diarrhea. This strain is being sequenced as a reference for the Human Microbiome Project (HMP).

Accession	PRJNA30071
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Helicobacter canadensis MIT 98-5491[Taxonomy ID: 537970] Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter canadensis; Helicobacter canadensis MIT 98-5491
Publications	Shen Z et al., "Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques.", Genome Announc, 2014 Sep 11;2(5) Fox JG et al., "Helicobacter canadensis sp. nov. isolated from humans with diarrhea as an example of an emerging pathogen.", J Clin Microbiol, 2000 Jul;38(7):2546-9
Submission	Registration date: 26-Aug-2008 - Broad Institute - Broad Institute
Locus Tag Prefix	HCMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	150
WGS master	1
SRA Experiments	6
Protein Sequences	1627
Publications
PubMed	2
PMC	2
Other datasets
BioSample	2
Assembly	1

Genome assemblies, organelles and plasmids:

Assembly GCA_000155455.1 :

Name	GenBank
Whole Genome Shotgun Assembly	ABQS00000000

SRA Data Details

Parameter	Value
Data volume, Mbases	99
Data volume, Mbytes	245

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LinkOut to external resources

GOLD: Gp0003605 [Genomes On Line Database]
GOLD: Gp0003605
Genomes On Line Database
643886213: Helicobacter canadensis MIT 98-5491, ATCC 700968 [Integrated Microbial Genomes]
643886213: Helicobacter canadensis MIT 98-5491, ATCC 700968
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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