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Sample GSM1517172 Query DataSets for GSM1517172
Status Public on Jan 15, 2015
Title PBBA2_mRNA
Sample type RNA
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: Activated (IL4, anti-CD40, IgM, and IgD) peripheral blood
tumor: none
Sex: male
previously treated for nhl: NA
cell type: peripheral blood B cells
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for peripheral blood B cells using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
VALUE log2-rma-exon-default-dabg

Data table
7892501 1.60739 0.312918
7892502 2.93108 0.0322672
7892503 1.30083 0.270475
7892504 8.72409 3.68689e-07
7892505 4.28551 8.90628e-06
7892506 1.65966 0.833233
7892507 1.58301 0.686339
7892508 0.936564 0.990833
7892509 9.8647 4.44414e-09
7892510 0.942263 0.785491
7892511 2.61815 0.0118605
7892512 3.10135 0.194971
7892513 2.11746 0.139654
7892514 7.21682 2.99025e-07
7892515 8.51907 4.1612e-08
7892516 2.28205 0.247045
7892517 6.73129 6.62215e-05
7892518 1.20068 0.737516
7892519 2.68094 0.588199
7892520 9.04839 6.9856e-08

Total number of rows: 257430

Table truncated, full table size 6471 Kbytes.

Supplementary file Size Download File type/resource
GSM1517172_PBBA2.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM1517172_PBBA2.rma-exon-default-dabg.chp.gz 2.1 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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