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Sample GSM1517162 Query DataSets for GSM1517162
Status Public on Jan 15, 2015
Title FL8_mRNA
Sample type RNA
Source name CD19+ B cells
Organism Homo sapiens
Characteristics tissue: LN
tumor: FL1-2
age: 53
Sex: female
previously treated for nhl: yes
cell type: follicular lymphoma
Treatment protocol none
Growth protocol none
Extracted molecule total RNA
Extraction protocol RNA was purified using Qiagen RNeasy Kits according to the manufacturer’s protocol.
Label biotin
Label protocol Purified RNA was amplified using Nugen Ovation Pico SL or Ovation Pico kits and labeled using Nugen Encore Biotin kit
Hybridization protocol Products were hybridized to Affymetrix Human Gene 1.0 ST arrays according to the manufacturer’s protocol
Scan protocol GS3000
Description Gene expression analysis was performed for FL using Affymetrix Human Gene 1.0 ST arrays
Data processing Gene expression levels were determined using the Affymetrix Expression Console software (v1.2.0.20) with exon-level RMA analysis and default settings
Submission date Sep 30, 2014
Last update date Jan 15, 2015
Contact name Jacqueline Payton
Organization name Washington University School of Medicine
Department Pathology and Immunology
Street address 660 S. Euclid Ave
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platform ID GPL10739
Series (2)
GSE61912 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma (array)
GSE62246 Enhancer Sequence Variants and Transcription Factor Deregulation Synergize to Construct Pathogenic Regulatory Circuits in B Cell Lymphoma

Data table header descriptions
VALUE log2-rma-exon-default-dabg

Data table
7892501 2.40835 0.033108
7892502 4.57236 1.37132e-05
7892503 3.22262 0.00481325
7892504 9.03404 8.93263e-08
7892505 2.91815 0.00795975
7892506 3.38069 0.0385875
7892507 4.79288 0.00358531
7892508 4.15569 0.00099385
7892509 10.2953 4.44414e-09
7892510 3.72225 0.0111509
7892511 3.72452 0.000649171
7892512 6.6879 7.97452e-05
7892513 2.67617 0.019415
7892514 8.23623 7.7328e-08
7892515 9.61681 4.55741e-09
7892516 7.623 8.70087e-09
7892517 5.79839 5.53539e-05
7892518 2.23482 0.202162
7892519 4.67898 0.00877449
7892520 9.0398 3.36782e-07

Total number of rows: 257430

Table truncated, full table size 6564 Kbytes.

Supplementary file Size Download File type/resource
GSM1517162_FL8.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM1517162_FL8.rma-exon-default-dabg.chp.gz 2.2 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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