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Sample GSM1103444 Query DataSets for GSM1103444
Status Public on Dec 31, 2013
Title 13-1_IMDM
Sample type RNA
Source name untreated
Organism Mus musculus
Characteristics treatment: untreated
cell type: microglia
Treatment protocol untreated
Extracted molecule total RNA
Extraction protocol RNAeasy
Label Cy3
Label protocol 500ng of total RNA were applied for Cy3-labelling reaction using the one color Quick Amp Labeling protocol (Agilent Technologies; Waldbronn, Germany).
Hybridization protocol 1.6 µg labeled cRNA was hybridized to microarrays for 16h at 68°C and scanned using the Agilent DNA Microarray Scanner.
Scan protocol Microarrays were scanned using the Agilent Scanner System. Data extractions were performed using Feature Extraction Software 10.7.1 (Agilent) with default patrameters of the GE1_107_Sep09 extraction protocol
Description 13-1_IMDM
Data processing log2 transformed, median normalized to all samples, signal intensity expressed as relative to median signal intensity of all samples
Submission date Mar 21, 2013
Last update date Apr 25, 2018
Contact name Robert Geffers
Phone +49 531-6181-3058
Organization name HCI - Helmholtz Centre for Infection Research
Department Dep. Molecular Bacteriology
Lab Genome Analytics
Street address Inhoffenstr. 7
City Braunschweig
ZIP/Postal code 38124
Country Germany
Platform ID GPL11202
Series (1)
GSE45384 Effects of Th1- and Th17-derived factors on microglia.
Reanalyzed by GSE113579

Data table header descriptions
VALUE median centered relative expression signal

Data table
A_55_P1989846 0.31179523
A_55_P1991598 -0.2752905
A_55_P2022211 0.23117208
A_55_P1980764 -0.22834444
A_55_P1964375 0.039176464
A_51_P128876 -0.96809816
A_55_P2121042 -0.13870049
A_52_P219230 -0.009626389
A_51_P207591 -0.0567441
A_55_P2131920 -0.1809535
A_55_P2404223 -0.19656897
A_55_P2101944 0.29896116
A_52_P358860 -0.28301573
A_51_P119031 0.20572472
A_51_P309854 0.0581007
A_51_P343900 -0.01191473
A_51_P234359 -0.27735138
A_51_P487813 -0.015656948
A_52_P613977 0.13281012
A_55_P1957209 0.043925285

Total number of rows: 39483

Table truncated, full table size 967 Kbytes.

Supplementary file Size Download File type/resource
GSM1103444_Floess1004.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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