GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE73472 Query DataSets for GSE73472
Status Public on Aug 11, 2016
Title In vivo characterization of Linc-p21 reveals functional cis-regulatory DNA elements
Organisms Mus musculus; synthetic construct
Experiment type Expression profiling by high throughput sequencing
Summary We have sequenced wildtype and mutant heart, liver, lung, and hindlimb from E14.5 embryos of the mutant lncRNA strain Trp53cor1tm1.1Vlcg (lincp21), and performed a massively parallel reporter assay (MPRA) in mouse myoblast cells (C2C12).
Overall design Comparison between wildtype and mutant organ transcriptomes in the Trp53cor1tm1.1Vlcg strain. Additionally, we include a comparison between MPRA signal vector tag distributions and C2C12 tag distributions.
Contributor(s) Groff AF, Rinn JL
Citation(s) 27524623
Submission date Sep 26, 2015
Last update date May 15, 2019
Contact name Abbie Groff
Organization name Harvard University
Department Stem Cell and Regenerative Biology;
Lab John Rinn
Street address 7 Divinity Ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19604 Illumina HiSeq 2500 (synthetic construct)
Samples (33)
GSM1895373 linc-p21_L21-4_WT-M_E14.5 Leg
GSM1895374 linc-p21_L21-7_WT-F_E14.5 Leg
GSM1895375 linc-p21_L22-4_WT-M_E14.5 Leg
BioProject PRJNA297110
SRA SRP064223

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource 13.6 Mb (ftp)(http) TAB 13.7 Mb (ftp)(http) TAB 13.6 Mb (ftp)(http) TAB 13.6 Mb (ftp)(http) TAB 271.1 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap