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Sample GSM2214669 Query DataSets for GSM2214669
Status Public on Aug 11, 2016
Title vec_2
Sample type SRA
 
Source name MPRA vector
Organism synthetic construct
Characteristics tissue type: MPRA vector
Extracted molecule other
Extraction protocol C2C12 cells were harvested in TRIzol.
Libraries were generated from cDNA using indexed primers against the tag-containing GFP.
 
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2500
 
Description Vector DNA
Data processing Casava 1.8.2 was used to call bases
Reads containing barcodes with a perfect match to a designed barcode and originating from a read with GFP sequence were counted.
analysis scripts were run in R, and are provided in supplemental material for the paper
Supplementary_files_format_and_content: a tab-delimited processed file showing normalized counts for tags associated to lincp21 genomic sequence and all relevent annotation information
 
Submission date Jun 27, 2016
Last update date May 15, 2019
Contact name Abbie Groff
E-mail(s) agroff@fas.harvard.edu
Organization name Harvard University
Department Stem Cell and Regenerative Biology;
Lab John Rinn
Street address 7 Divinity Ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL19604
Series (1)
GSE73472 In vivo characterization of Linc-p21 reveals functional cis-regulatory DNA elements
Relations
BioSample SAMN05294026
SRA SRX1879450

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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