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Series GSE55852 Query DataSets for GSE55852
Status Public on Jun 21, 2014
Title GTF2I Mutations are Common in Thymic Epithelial Tumors
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Within a project aim to define the genomic aberration of thymic epithelial tumors, we performed array CGH in 65 thymic epithelial tumors. Tumor samples were collected during surgery or by image-guided biopsies and immediately frozen. Section from frozen material were cut and stained with Haematoxylin and Eosin. A pathologist reviewed the slides and selected only cases with >80% of cancer cells.
Overall design Copy number aberrations of a series of 65 thymic epithelial tumors were evaluated using array CGH. Differences in copy number aberrations between different histotypes were evaluated. Significant regions of CN aberrations were defined using GISTIC algorithms.
Contributor(s) Petrini I, Meltzer PS, Kim IK, Lucchi M, Fontanini G, Gao J, Zucali PA, Calabrese F, Favaretto A, Federico R, Rodriguez-Canales J, Walker RL, Pineda M, Zhu YJ, Lau C, Killian KJ, Bilke S, Voeller D, Dakshanamurthy S, Wang Y, Giaccone G
Citation(s) 24974848
Submission date Mar 13, 2014
Last update date Oct 31, 2014
Contact name Iacopo Petrini
Phone 00393428566432
Organization name Pisa University
Street address Via Roma 67
City Pisa
ZIP/Postal code 56100
Country Italy
Platforms (1)
GPL10123 Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)
Samples (65)
GSM1347258 N-Thy001
GSM1347259 N-Thy002
GSM1347260 N-Thy004
BioProject PRJNA241155

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55852_RAW.tar 1.1 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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