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Sample GSM1347265 Query DataSets for GSM1347265
Status Public on Jun 21, 2014
Title N-Thy011
Sample type genomic
 
Channel 1
Source name Frozen Tumor
Organism Homo sapiens
Characteristics tumor: Thymic Carcinoma
Sex: F
who: TC
Stage: IVB
gtf2i: WT
Treatment protocol none
Growth protocol none
Extracted molecule genomic DNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen)
Label Cy5
Label protocol Genomic DNA ULS Labeling Kit (Agilent)
 
Channel 2
Source name Promega
Organism Homo sapiens
Characteristics reference: Commercial Normal Genomic DNA
Sex: Male
Treatment protocol none
Growth protocol none
Extracted molecule genomic DNA
Extraction protocol AllPrep DNA/RNA Mini Kit (Qiagen)
Label Cy3
Label protocol Genomic DNA ULS Labeling Kit (Agilent)
 
 
Hybridization protocol Oligoarray control targets and hybridization buffer (Agilent In Situ Hybridization Kit Plus) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential
Scan protocol Scanned on an Agilent G2565AA scanner.
Images were quantified using Agilent Feature Extraction Software (version A.10.5).
Description Array CGH of tumor DNA
Data processing Agilent Feature Extraction Software (v 10.5) was used for background subtraction and LOWESS normalization.
 
Submission date Mar 13, 2014
Last update date Jun 22, 2014
Contact name Iacopo Petrini
E-mail(s) i.petrini@sssup.it
Phone 00393428566432
Organization name Pisa University
Street address Via Roma 67
City Pisa
ZIP/Postal code 56100
Country Italy
 
Platform ID GPL10123
Series (1)
GSE55852 GTF2I Mutations are Common in Thymic Epithelial Tumors

Data table header descriptions
ID_REF
VALUE normalized log10 ratio (Cy5/Cy3) representing test/reference

Data table
ID_REF VALUE
1 -2.82E-02
2 -5.74E-02
3 2.36E-04
4 7.45E-02
5 4.35E-01
6 2.99E-01
7 2.03E-01
8 2.01E-01
9 -3.52E-02
10 2.10E-01
11 7.06E-02
12 1.45E-01
13 1.40E-01
14 -3.82E-03
15 -2.13E-02
16 2.33E-01
17 8.04E-02
18 7.29E-02
19 -2.95E-02
20 -3.32E-01

Total number of rows: 180880

Table truncated, full table size 2811 Kbytes.




Supplementary file Size Download File type/resource
GSM1347265_N-Thy011_US82400122_252206015064_S01_CGH_107_Sep09_1_3_hg19.txt.gz 13.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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