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Status
Public on Mar 10, 2010
Title
Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
SurePrint G3 Human CGH Microarray 4x180K Arrays of this design have barcodes that begin with 16022060 or 2522060. Data table annotations based on build hg18:NCBI36:Mar2006. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. A different version of this platform with the Agilent Probe Names in the ID column is assigned accession number GPL10150. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Mar 02, 2010
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (1333)
GSM536304 , GSM536305 , GSM536306 , GSM536307 , GSM536308 , GSM536309
GSM536310 ,
GSM536311 ,
GSM536312 ,
GSM536313 ,
GSM536314 ,
GSM536315 ,
GSM536316 ,
GSM536317 ,
GSM536318 ,
GSM536319 ,
GSM536320 ,
GSM536321 ,
GSM536322 ,
GSM536323 ,
GSM536324 ,
GSM536325 ,
GSM536326 ,
GSM536327 ,
GSM536328 ,
GSM536329 ,
GSM536330 ,
GSM536331 ,
GSM536332 ,
GSM536333 ,
GSM536334 ,
GSM536335 ,
GSM536336 ,
GSM568877 ,
GSM568878 ,
GSM577164 ,
GSM577165 ,
GSM577166 ,
GSM577167 ,
GSM577168 ,
GSM577169 ,
GSM577170 ,
GSM577171 ,
GSM577172 ,
GSM577173 ,
GSM577174 ,
GSM577175 ,
GSM577176 ,
GSM577177 ,
GSM577178 ,
GSM577179 ,
GSM577180 ,
GSM577181 ,
GSM577182 ,
GSM577183 ,
GSM577184 ,
GSM577185 ,
GSM577186 ,
GSM577187 ,
GSM577188 ,
GSM577189 ,
GSM577190 ,
GSM577191 ,
GSM577192 ,
GSM577193 ,
GSM577194 ,
GSM577195 ,
GSM577196 ,
GSM577197 ,
GSM577198 ,
GSM577199 ,
GSM577200 ,
GSM577201 ,
GSM577202 ,
GSM577203 ,
GSM577204 ,
GSM577205 ,
GSM577206 ,
GSM606475 ,
GSM606477 ,
GSM606490 ,
GSM606504 ,
GSM606510 ,
GSM606511 ,
GSM606514 ,
GSM606516 ,
GSM606527 ,
GSM606529 ,
GSM606540 ,
GSM606543 ,
GSM606545 ,
GSM606550 ,
GSM606553 ,
GSM606586 ,
GSM620918 ,
GSM620919 ,
GSM620920 ,
GSM620921 ,
GSM620922 ,
GSM620923 ,
GSM620924 ,
GSM620925 ,
GSM620926 ,
GSM620927 ,
GSM620928 ,
GSM620929 ,
GSM620930 ,
GSM620931 ,
GSM620932 ,
GSM620933 ,
GSM620934 ,
GSM624007 ,
GSM657844 ,
GSM657845 ,
GSM685387 ,
GSM685388 ,
GSM685389 ,
GSM685390 ,
GSM685391 ,
GSM685392 ,
GSM685393 ,
GSM685394 ,
GSM685395 ,
GSM685396 ,
GSM685397 ,
GSM685398 ,
GSM685399 ,
GSM703156 ,
GSM703157 ,
GSM703158 ,
GSM820725 ,
GSM821647 ,
GSM849618 ,
GSM849619 ,
GSM849620 ,
GSM849621 ,
GSM849646 ,
GSM849647 ,
GSM849648 ,
GSM849688 ,
GSM849689 ,
GSM869119 ,
GSM869120 ,
GSM869121 ,
GSM869122 ,
GSM869123 ,
GSM869124 ,
GSM869125 ,
GSM869126 ,
GSM869127 ,
GSM869128 ,
GSM869129 ,
GSM869130 ,
GSM869131 ,
GSM869132 ,
GSM869133 ,
GSM869134 ,
GSM869135 ,
GSM869136 ,
GSM869137 ,
GSM869138 ,
GSM869139 ,
GSM869140 ,
GSM869141 ,
GSM869142 ,
GSM869143 ,
GSM869144 ,
GSM869145 ,
GSM869146 ,
GSM869147 ,
GSM869148 ,
GSM869149 ,
GSM869150 ,
GSM869151 ,
GSM869152 ,
GSM869153 ,
GSM869154 ,
GSM869155 ,
GSM869156 ,
GSM869157 ,
GSM869158 ,
GSM869159 ,
GSM869160 ,
GSM869161 ,
GSM869162 ,
GSM869163 ,
GSM869164 ,
GSM869165 ,
GSM869166 ,
GSM869167 ,
GSM869168 ,
GSM869169 ,
GSM869170 ,
GSM869171 ,
GSM869172 ,
GSM869173 ,
GSM869174 ,
GSM869175 ,
GSM869176 ,
GSM869177 ,
GSM869178 ,
GSM869179 ,
GSM869180 ,
GSM869181 ,
GSM869182 ,
GSM869183 ,
GSM869184 ,
GSM869185 ,
GSM869186 ,
GSM869187 ,
GSM869188 ,
GSM869189 ,
GSM869190 ,
GSM869191 ,
GSM869192 ,
GSM869193 ,
GSM869194 ,
GSM869195 ,
GSM869196 ,
GSM869197 ,
GSM869198 ,
GSM869199 ,
GSM869200 ,
GSM869201 ,
GSM869202 ,
GSM937060 ,
GSM937061 ,
GSM937062 ,
GSM937063 ,
GSM937064 ,
GSM937065 ,
GSM937066 ,
GSM937067 ,
GSM937068 ,
GSM937069 ,
GSM937070 ,
GSM937071 ,
GSM937072 ,
GSM937073 ,
GSM976998 ,
GSM976999 ,
GSM977000 ,
GSM977001 ,
GSM977002 ,
GSM977003 ,
GSM977004 ,
GSM977005 ,
GSM977006 ,
GSM977007 ,
GSM977008 ,
GSM977009 ,
GSM977010 ,
GSM977011 ,
GSM977012 ,
GSM977013 ,
GSM977014 ,
GSM977015 ,
GSM977016 ,
GSM977017 ,
GSM977018 ,
GSM977019 ,
GSM977020 ,
GSM977021 ,
GSM977022 ,
GSM991045 ,
GSM1010234 ,
GSM1010235 ,
GSM1010236 ,
GSM1010237 ,
GSM1010238 ,
GSM1010239 ,
GSM1024617 ,
GSM1024618 ,
GSM1024619 ,
GSM1024620 ,
GSM1024621 ,
GSM1024622 ,
GSM1024623 ,
GSM1024624 ,
GSM1024625 ,
GSM1024626 ,
GSM1024627 ,
GSM1024628 ,
GSM1024629 ,
GSM1024630 ,
GSM1024631 ,
GSM1024632 ,
GSM1024633 ,
GSM1024635 ,
GSM1024636 ,
GSM1024637 ,
GSM1024638 ,
GSM1024639 ,
GSM1024640 ,
GSM1024642 ,
GSM1024645 ,
GSM1024648 ,
GSM1024650 ,
GSM1024653 ,
GSM1024656 ,
GSM1024659 ,
GSM1024662 ,
GSM1024665 ,
GSM1024667 ,
GSM1024670 ,
GSM1024671 ,
GSM1024672 ,
GSM1024673 ,
GSM1024674 ,
GSM1024675 ,
GSM1024676 ,
GSM1024677 ,
GSM1024678 ,
GSM1024679 ,
GSM1024680 ,
GSM1024681 ,
GSM1024682 ,
GSM1024683 ,
GSM1054411 ,
GSM1071622 ,
GSM1071623 ,
GSM1071624 ,
GSM1071625 ,
GSM1081722 ,
GSM1081723 ,
GSM1081724 ,
GSM1081725 ,
GSM1081726 ,
GSM1081727 ,
GSM1081728 ,
GSM1081729 ,
GSM1151282 ,
GSM1204982 ,
GSM1204983 ,
GSM1204984 ,
GSM1204985 ,
GSM1232130 ,
GSM1232131 ,
GSM1232132 ,
GSM1232133 ,
GSM1232134 ,
GSM1232135 ,
GSM1232136 ,
GSM1232137 ,
GSM1232138 ,
GSM1232139 ,
GSM1232140 ,
GSM1232141 ,
GSM1232142 ,
GSM1232143 ,
GSM1232144 ,
GSM1232145 ,
GSM1232146 ,
GSM1232147 ,
GSM1232148 ,
GSM1232149 ,
GSM1232150 ,
GSM1232151 ,
GSM1232152 ,
GSM1232153 ,
GSM1232154 ,
GSM1232155 ,
GSM1232156 ,
GSM1281608 ,
GSM1281609 ,
GSM1281610 ,
GSM1281611 ,
GSM1309342 ,
GSM1309343 ,
GSM1309344 ,
GSM1309345 ,
GSM1309346 ,
GSM1309347 ,
GSM1309348 ,
GSM1309349 ,
GSM1309350 ,
GSM1309351 ,
GSM1309352 ,
GSM1309353 ,
GSM1309354 ,
GSM1309355 ,
GSM1309356 ,
GSM1309357 ,
GSM1309358 ,
GSM1309359 ,
GSM1309360 ,
GSM1309361 ,
GSM1309362 ,
GSM1309363 ,
GSM1309364 ,
GSM1309365 ,
GSM1309366 ,
GSM1309367 ,
GSM1309368 ,
GSM1309369 ,
GSM1309370 ,
GSM1309371 ,
GSM1309372 ,
GSM1309373 ,
GSM1309374 ,
GSM1309375 ,
GSM1309376 ,
GSM1309377 ,
GSM1309378 ,
GSM1309379 ,
GSM1309380 ,
GSM1309381 ,
GSM1309382 ,
GSM1309383 ,
GSM1309384 ,
GSM1309385 ,
GSM1309386 ,
GSM1309387 ,
GSM1309388 ,
GSM1309389 ,
GSM1309390 ,
GSM1309391 ,
GSM1309392 ,
GSM1309393 ,
GSM1309394 ,
GSM1309395 ,
GSM1309396 ,
GSM1309397 ,
GSM1309398 ,
GSM1309399 ,
GSM1309400 ,
GSM1309401 ,
GSM1309402 ,
GSM1309405 ,
GSM1309406 ,
GSM1309407 ,
GSM1309408 ,
GSM1309409 ,
GSM1309410 ,
GSM1309411 ,
GSM1309412 ,
GSM1309413 ,
GSM1309414 ,
GSM1309415 ,
GSM1309416 ,
GSM1327943 ,
GSM1327946 ,
GSM1327950 ,
GSM1327957 ,
GSM1327964 ,
GSM1327970 ,
GSM1333853 ,
GSM1333854 ,
GSM1333855 ,
GSM1333856 ,
GSM1333857 ,
GSM1333858 ,
GSM1333859 ,
GSM1333860 ,
GSM1333861 ,
GSM1333862 ,
GSM1333863 ,
GSM1333864 ,
GSM1333865 ,
GSM1333866 ,
GSM1333867 ,
GSM1333868 ,
GSM1333869 ,
GSM1333870 ,
GSM1333871 ,
GSM1333872 ,
GSM1333873 ,
GSM1333874 ,
GSM1333875 ,
GSM1333876 ,
GSM1333877 ,
GSM1333878 ,
GSM1333879 ,
GSM1333880 ,
GSM1333881 ,
GSM1333882 ,
GSM1333883 ,
GSM1333884 ,
GSM1333885 ,
GSM1333886 ,
GSM1334479 ,
GSM1334480 ,
GSM1334481 ,
GSM1334482 ,
GSM1334483 ,
GSM1334484 ,
GSM1347258 ,
GSM1347259 ,
GSM1347260 ,
GSM1347261 ,
GSM1347262 ,
GSM1347263 ,
GSM1347264 ,
GSM1347265 ,
GSM1347266 ,
GSM1347267 ,
GSM1347268 ,
GSM1347269 ,
GSM1347270 ,
GSM1347271 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (88)
GSE21468
Array CGH-based Characterization of Genetic Alterations in Pulmonary Neuroendocrine Tumors
GSE23065
Multiple chromosomal monosomies are characteristic of giant cell ependymoma
GSE23540
Copy number aberrations of genes regulating normal thymus development in thymic epithelial tumors
GSE24602
Comprehensive array CGH of normal karyotype Myelodysplastic syndrome reveals hidden recurrent and individual genomic copy number aberrations with prognostic relevance
GSE25228
Chromosomal abnormalities in colorectal cancer
GSE25229
Genome-wide analysis of unbalanced chromosomal changes in colorectal carcinoma
GSE25411
Molecular Cytogenetic Analysis of a Gliosarcoma with Osseous Metaplasia
GSE26715
miR-1245 induce genomic instability
GSE27671
Genomic Aberrations in Paediatric Gliomas and Embryonal Tumours
GSE28450
aCGH analysis of familial Alzheimer’s disease with presenilin 2 mutation patient-specific induced pluripotent stem cells
GSE32414
Hypoxia-induced stem-like cancer cells resistance to VEGFR inhibition
GSE34484
LNGFR- and Thy-1-based prospective isolation of human mesenchymal stem cells reveals functionally distinct subpopulations.
GSE35476
Array CGH analysis of human colorectal tumors
GSE35534
Genome-wide copy number aberrations and methylation profiles in human colorectal lesions
GSE38229
aCGH was used to identify the overall genomic imbalances of SCC of the vulva in 14 patients
GSE38230
SCC of the vulva
GSE39663
Copy Number Data from Archival Leiomyosarcoma
GSE40299
Deep Clonal Profiling of Formalin-Fixed Paraffin-Embedded Clinical Samples
GSE41188
High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development (aCGH)
GSE41193
High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development
GSE41813
Colorectal tumor DNA vs. normal control DNA
GSE42984
Variant acute promyelocytic leukemia (APL) bone marrow aCGH
GSE43810
Phenotypic and genotypic stability in a preclinical model of renal cell carcinoma
GSE44275
Analysis of whole-genome copy-number variation in Crohn's disease fistula tissue
GSE47506
Recurrent 11q aberrations in MYC-neg mature aggressive B-cell lymphomas resembling BL
GSE47508
A recurrent 11q aberration pattern characterizes a subset of MYC-negative mature aggressive B-cell lymphomas resembling Burkitt lymphoma
GSE49693
Replication timing of siRNA control and siRNA PolQRKO cells
GSE50897
Bioinformatic evaluation and comparison of parallel aSNP and aCGH analyses of myelodysplastic syndromes patients with normal karyotype
GSE53070
Replication timing of control and overexpressed PolQ fibroblast cells
GSE54183
Metastatic potential is determined early in synovial sarcoma development and reflected by tumor molecular features [aCGH]
GSE54185
Intratumoral heterogeneity of prostate cancers
GSE54188
Metastatic potential is determined early in synovial sarcoma development and reflected by tumor molecular features
GSE55016
Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer
GSE55150
Desmoplastic Melanoma
GSE55345
Generation 2.5 Antisense Oligonucleotides Targeting the Androgen Receptor and its Splice Variants Suppress Enzalutamide-Resistant Prostate Cancer Cell Growth
GSE55852
GTF2I Mutations are Common in Thymic Epithelial Tumors
GSE55989
ZEB1 expression prevents DNA replication stress in cancer stem cells and delays chromosomal instability [Agilent]
GSE56031
ZEB1 expression prevents DNA replication stress in cancer stem cells and delays chromosomal instability
GSE57176
Early and advanced gastric cancer genomes
GSE58512
Intratumoral heterogeneity of colorectal cancers with distant metastases
GSE59902
DNA methylation study in breast cancer [aCGH]
GSE59903
DNA methylation study in breast cancer
GSE60067
Cervical neoplasia genomes
GSE64597
WDLPS and DDLPS aCGH case 73
GSE65304
Comprehensive genomic analysis of relapse neuroblastoma [arrayCGH]
GSE65307
Comprehensive genomic analysis of relapse neuroblastoma
GSE65720
Clonal relationship of relapsing diffuse large B-cell lymphoma
GSE67131
NPM‐ALK permits the survival of thymic T cells with aberrant T cell receptor rearrangements enabling thymic escape and tumor development
GSE67487
Genomic characterization of mesothelioma patients by CGH arrays.
GSE67841
Spitz tumors and melanomas with MET fusion
GSE69083
Replication timing of control and siRNA PR-set7 cells
GSE69084
Replication timing of control and suv4-20h (KO and inducible mutant) cells
GSE69085
Degree of H4-K20me defines distinct subsets of replication origins in active and silent chromatin domains of mammalian cells
GSE73199
Simultaneous amplification and mutation of KRAS: a therapeutic target in a rare subgroup of glioblastoma?
GSE73979
3 cases of renal cell carcinomas with TFEB amplification
GSE77392
SAMHD1 degrades nascent DNA at stalled Forks to promote replication restart
GSE80029
Replication timing program in 6 human model cell lines
GSE81625
NTRK3 kinase fusions in melanocytic tumors
GSE85295
Intra-individual genomic heterogeneity of ovarian serous adenocarcinoma [Agilent]
GSE85296
Intra-individual tumoral heterogeneity of ovarian serous adenocarcinomas
GSE89982
Amplification of KRAS in a low grade glioma
GSE90778
Array-CGH data of aneuploid tumor populations of different urothelial cancer sites in one patient
GSE96039
Ovarian tumors associated with Yo-PCD
GSE96905
Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [Agilent022060]
GSE96909
Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans
GSE101447
Intratumor heterogeneity in metastic endometrial carcinoma
GSE102974
SHED: control vs Hepatocyte-like cells
GSE103665
Copy number alteration burden is a pan-cancer prognostic factor associated with metastasis and death in conservatively treated prostate cancer: TAPG1 CNA cohort aCGH data
GSE106773
ArrayCGH on a cohort of pediatric T-ALL cases characterized by TCRAD-MYC translocation
GSE110785
Whole genome copy number profiles of FFPE samples from patients with metasatic colorectal cancer (mCRC)
GSE111298
aCGH data from SCEC and corresponding normal samples
GSE111299
Genome-wide analysis of gene expression and DNA copy number variations in small cell esophageal carcinoma
GSE118910
Analysis of copy number variation (CNV) in human induced hepatic progenitor cells (hiHepPCs) by aCGH
GSE131200
Detection of tetraploidization in chromophobe renal cell carcinoma: insights and pitfalls [Agilent CGH]
GSE138404
Array CGH analysis of human uveal melanomas
GSE138665
Single-cell RNA-seq reveals intratumoral heterogeneity in primary uveal melanomas
GSE141122
New, easy, quick and efficient DNA replication timing analysis by high-throughput approaches
GSE145340
19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis (Agilent-022060)
GSE145341
19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis
GSE153228
Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma [Agilent]
GSE153230
Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma
GSE156076
The genomic landscape of colitis-associated colorectal carcinomas is dominated by TP53 mutations, aneuploidy and gains of chromosome arm 5p
GSE156618
Replication timing data for six human cell lines under aphidicolin treatment (t0) and after release (N+1)
GSE178927
DNA polymerase zeta contributes to heterochromatin replication to prevent genome instability
GSE180530
Palbociclib interferes with origin firing in a pRb independent manner
GSE180865
GNL3/nucleostemin links DNA replication homeostasis and replication forks stability
GSE248981
DBF4, not DRF1, is the crucial regulator of CDC7 kinase at replication forks.
GSE254936
Proteogenomic analysis reveals adaptive strategies to alleviate the consequences of aneuploidy in cancer
Relations
Alternative to
GPL10150
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
Agilent Probe Name
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBank or RefSeq Accession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
RANGE_GB
RefSeq.version of chromosome (NBCI Build 36)
RANGE_START
Start position (relative to the RANGE_GB accession)
RANGE_END
End position (relative to the RANGE_GB accession)
CYTOBAND
Cytoband
DESCRIPTION
Description
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
RANGE_GB
RANGE_START
RANGE_END
CYTOBAND
DESCRIPTION
1
532
340
HsCGHBrightCorner
pos
2
532
338
DarkCorner2
pos
3
532
336
DarkCorner2
pos
4
532
334
DarkCorner2
pos
5
532
332
DarkCorner2
pos
6
532
330
DarkCorner2
pos
7
532
328
DarkCorner2
pos
8
532
326
DarkCorner2
pos
9
532
324
DarkCorner2
pos
10
532
322
DarkCorner2
pos
11
532
320
DarkCorner2
pos
12
532
318
DarkCorner2
pos
13
532
316
DarkCorner2
pos
14
532
314
DarkCorner2
pos
15
532
312
DarkCorner2
pos
16
532
310
DarkCorner2
pos
17
532
308
DarkCorner2
pos
18
532
306
DarkCorner2
pos
19
532
304
DarkCorner2
pos
20
532
302
DarkCorner2
pos
Total number of rows: 180880 Table truncated, full table size 33868 Kbytes .
Supplementary data files not provided