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Series GSE53045 Query DataSets for GSE53045
Status Public on Feb 27, 2014
Title Epigenome analysis of smoking in peripheral blood mononuclear cells (PBMC) samples
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of smokers and non-smokers in PBMC samples. The Illumina Infinium 450k Human DNA methylation Beadchip v1.1 was used to obtain DNA methylation profiles across 485,577 CpGs in PBMC samples. Samples included 50 smokers and 61 non-smokers.
 
Overall design Bisulfite converted DNA from the 111 samples were hybridized to the Illumina Infinium 450k Human Methylation Beadchip v1.1
 
Contributor(s) Philibert RA
Citation(s) 24559495
Submission date Dec 05, 2013
Last update date Mar 22, 2019
Contact name Robert A Philibert
E-mail(s) robert-philibert@uiowa.edu
Phone 3193534986
Organization name University of Iowa
Department Psychiatry
Street address MEB, 500 Newton Road, Room 2-126D
City Iowa City
State/province Iowa
ZIP/Postal code 52242
Country USA
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (111)
GSM1280914 genomic DNA from PBMC 1 Smoker
GSM1280915 genomic DNA from PBMC 2 Smoker
GSM1280916 genomic DNA from PBMC 3 Smoker
Relations
BioProject PRJNA230735

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE53045_RAW.tar 183.1 Mb (http)(custom) TAR
GSE53045_matrix_processed_GEO.txt.gz 149.7 Mb (ftp)(http) TXT
GSE53045_matrix_signal_GEO.txt.gz 253.9 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
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