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Sample GSM1281011 Query DataSets for GSM1281011
Status Public on Feb 27, 2014
Title genomic DNA from PBMC 98 Control
Sample type genomic
 
Source name PBMC 98
Organism Homo sapiens
Characteristics gender: Female
sample type: PBMC
disease state: Control
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from PBMC samples using QIAamp DNA Blood Mini Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description non-smoker PBMC sample
Data processing Genome Studios V2011.1
 
Submission date Dec 05, 2013
Last update date Aug 04, 2015
Contact name Robert A Philibert
E-mail(s) robert-philibert@uiowa.edu
Phone 3193534986
Organization name University of Iowa
Department Psychiatry
Street address MEB, 500 Newton Road, Room 2-126D
City Iowa City
State/province Iowa
ZIP/Postal code 52242
Country USA
 
Platform ID GPL13534
Series (1)
GSE53045 Epigenome analysis of smoking in peripheral blood mononuclear cells (PBMC) samples

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.63347 0
cg00000108 0.9389 0
cg00000109 0.87533 0
cg00000165 0.21126 0
cg00000236 0.80181 0
cg00000289 0.73132 0
cg00000292 0.83311 0
cg00000321 0.27428 0
cg00000363 0.3638 0
cg00000622 0.01198 0
cg00000658 0.75322 0
cg00000714 0.21339 0
cg00000721 0.91757 0
cg00000734 0.05923 0
cg00000769 0.06517 0
cg00000807 0.78468 0
cg00000884 0.82958 0
cg00000905 0.06926 0
cg00000924 0.48033 0
cg00000948 0.85314 0

Total number of rows: 485577

Table truncated, full table size 9908 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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