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| Status |
Public on Aug 03, 2011 |
| Title |
Great Ape Copy Number Variation |
| Platform organism |
Homo sapiens |
| Sample organisms |
Gorilla gorilla; Gorilla gorilla gorilla; Pan paniscus; Pan troglodytes; Pongo pygmaeus; Pongo abelii; Pongo sp.; Pan troglodytes troglodytes |
| Experiment type |
Genome variation profiling by genome tiling array
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| Summary |
Intra-specific polymorphism in copy number is documented in many organisms, including human and chimpanzee, but very little is known for other great apes. This study aims to provide CNVs data for orangutan, gorilla, bonobo and chimpanzee, and compare the CNV patterns among these species, as well as with human CNVs and segmental duplications from public databases.
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| Overall design |
Each sample is hybridized against a common reference of the same species for two dye combinations (e.g. chimp1_CY5 vs chimpREF_Cy3; chimp1_CY3 vs chimpREF_Cy5; bonobo1_CY5 vs bonoboREF_Cy3; bonobo1_CY3 vs bonoboREF_Cy5;)
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| Contributor(s) |
Gazave E, Darré F, Morcillo-Suarez C, Petit-Marty N, Carreño A, Marigorta UM, Ryder OA, Blancher A, Rocchi M, Bosch E, Baker C, Marquès-Bonet T, Eichler EE, Navarro A |
| Citation(s) |
21824994 |
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| Submission date |
Jul 11, 2011 |
| Last update date |
Mar 23, 2012 |
| Contact name |
Arcadi Navarro |
| E-mail(s) |
arcadi.navarro@upf.edu
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| Phone |
(+34)933160844
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| Organization name |
University Pompeu Fabra
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| Street address |
Plaça Charles Darwin, 1
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| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
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| Platforms (1) |
| GPL7749 |
NimbleGen/UWash Human 385K Design 2 |
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| Samples (58)
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| Relations |
| BioProject |
PRJNA144461 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE30559_RAW.tar |
864.9 Mb |
(http)(custom) |
TAR (of PAIR, TXT) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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