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Sample GSM758334 Query DataSets for GSM758334
Status Public on Aug 03, 2011
Title Clint_vs_PR01105
Sample type genomic
 
Channel 1
Source name Tissue sampled after natural death
Organism Pan troglodytes
Characteristics sample type: Clint reference sample
Growth protocol Tissue were maintained in -20C freezer before DNA extraction
Extracted molecule genomic DNA
Extraction protocol genomic DNA extracted by standard phenol chloroform extraction protocol
Label Cy5
Label protocol Performed by NimbleGen according to manufacturer's direction
 
Channel 2
Source name Tissue sampled after natural death
Organism Pan troglodytes
Characteristics sample type: PR01105 test sample
Growth protocol Tissue were maintained in -20C freezer before DNA extraction
Extracted molecule genomic DNA
Extraction protocol genomic DNA extracted by standard phenol chloroform extraction protocol
Label Cy3
Label protocol Performed by NimbleGen according to manufacturer's direction
 
 
Hybridization protocol Performed by NimbleGen according to manufacturer's direction
Scan protocol Performed by NimbleGen according to manufacturer's direction
Data processing Normalization was performed using NimbleScan 2.4.
 
Submission date Jul 11, 2011
Last update date Aug 03, 2011
Contact name Arcadi Navarro
E-mail(s) arcadi.navarro@upf.edu
Phone (+34)933160844
Organization name University Pompeu Fabra
Street address Plaça Charles Darwin, 1
City Barcelona
ZIP/Postal code 08003
Country Spain
 
Platform ID GPL7749
Series (1)
GSE30559 Great Ape Copy Number Variation

Data table header descriptions
ID_REF
VALUE Lowess normalized log2 Cy3/Cy5 ratios

Data table
ID_REF VALUE
CHR10FS010095100 0.090
CHR10FS010095500 0.155
CHR10FS010096000 0.219
CHR10FS010096450 0.197
CHR10FS010096850 -0.392
CHR10FS010097550 0.422
CHR10FS010097950 -0.193
CHR10FS010098950 0.166
CHR10FS010099400 -0.094
CHR10FS010099850 -0.213
CHR10FS010100250 0.107
CHR10FS010100750 -0.219
CHR10FS010101100 -0.344
CHR10FS010101550 -0.283
CHR10FS010102050 -0.697
CHR10FS010102550 -0.220
CHR10FS010102950 0.248
CHR10FS010103350 0.120
CHR10FS010103800 0.134
CHR10FS010104350 0.161

Total number of rows: 385027

Table truncated, full table size 8815 Kbytes.




Supplementary file Size Download File type/resource
GSM758334_228007CB40084_532.pair.gz 6.2 Mb (ftp)(http) PAIR
GSM758334_228007CB40084_635.pair.gz 6.1 Mb (ftp)(http) PAIR
GSM758334_228007CB40084_normalized_segMNT.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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