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Series GSE211330 Query DataSets for GSE211330
Status Public on Jan 06, 2023
Title Target enrichment sequencing of head and neck cell lines
Organism Homo sapiens
Experiment type Other
Summary We analysed HPV integration sites of UPCI-SCC-090 and UM-SCC-104.
Overall design Validation of HPV integration sites using target enrichment sequencing
Contributor(s) Mima M, Okabe A, Hoshii T, Nakagawa T, Kurokawa T, Kondo S, Mizokami H, Fukuyo M, Fujiki R, Rahmutulla B, Yoshizaki T, Hanazawa T, Misawa K, Kaneda A
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Submission date Aug 15, 2022
Last update date Jan 07, 2023
Contact name Masaki Fukuyo
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
Platforms (1)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
Samples (4)
GSM6466178 UPCI-SCC-090 WT
GSM6466179 UM-SCC-104 WT
GSM6466180 FaDu WT
This SubSeries is part of SuperSeries:
GSE211489 Tumorigenic activation around HPV integrated sites in head and neck squamous cell carcinoma
BioProject PRJNA869767

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211330_The_number_of_reads_for_each_target_site.txt.gz 2.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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