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Series GSE211489 Query DataSets for GSE211489
Status Public on Jan 06, 2023
Title Tumorigenic activation around HPV integrated sites in head and neck squamous cell carcinoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Aug 17, 2022
Last update date Jan 08, 2023
Contact name Masaki Fukuyo
E-mail(s) fukuyo@chiba-u.jp
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (3)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (76)
GSM6460379 UPCI-SCC-090_baitE6E7_replication1
GSM6460380 UPCI-SCC-090_baitE6E7_replication2
GSM6460381 UM-SCC-104_baitE6E7_replication1
This SuperSeries is composed of the following SubSeries:
GSE211280 4C-seq of HPV(+) head and neck cancer cell lines
GSE211296 Hi-C of head and neck cell lines
GSE211322 RNA-seq of head and neck cell lines
Relations
BioProject PRJNA870484

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211489_RAW.tar 35.2 Gb (http)(custom) TAR (of BEDGRAPH, HIC)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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