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Series GSE144454 Query DataSets for GSE144454
Status Public on May 01, 2022
Title A genome wide screening for effectors of chromatin accessibility
Organisms Homo sapiens; Mus musculus; synthetic construct
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 29, 2020
Last update date Nov 18, 2023
Contact name Yusuke Miyanari
E-mail(s) miyanari@staff.kanazawa-u.ac.jp
Phone 81 76 234 4571
Organization name Kanazawa University
Department NanoLSI
Lab Nuclear Dynamics
Street address Kakuma
City Kanazawa
ZIP/Postal code 9201192
Country Japan
 
Platforms (5)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL17769 Illumina MiSeq (synthetic construct)
Samples (75)
GSM4288430 ATAC-seq_Group1_NC1_rep1
GSM4288431 ATAC-seq_Group1_NC1_rep2
GSM4288432 ATAC-seq_Group1_TFDP1KO_rep1
This SuperSeries is composed of the following SubSeries:
GSE144448 ATAC-seq analyses with knockout eHAP cells for effector genes
GSE144449 ATAC-seq analyses by using Tn5 transposome assembled with IEOE19 adaptor DNAs
GSE144450 Genome-wide CRISPR screening combined with ATAC-see assay
Relations
BioProject PRJNA603682

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144454_RAW.tar 5.4 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
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