|
| Status |
Public on May 01, 2022 |
| Title |
MNase-seq analyses with TFDP1 knockout eHAP cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
A genome-wide screening identified effector genes of chromatin accessibility. To investigate the functional consequences of the loss of each effector gene, we conducted Mnase-seq with eHAP cells knocked out for TFDP1.
|
| |
|
| Overall design |
MNase-seq with spike-in control
|
| |
|
| Contributor(s) |
Ishii S, Miyanari Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jan 29, 2020 |
| Last update date |
May 02, 2022 |
| Contact name |
Yusuke Miyanari |
| E-mail(s) |
miyanari@staff.kanazawa-u.ac.jp
|
| Phone |
81 76 234 4571
|
| Organization name |
Kanazawa University
|
| Department |
NanoLSI
|
| Lab |
Nuclear Dynamics
|
| Street address |
Kakuma
|
| City |
Kanazawa |
| ZIP/Postal code |
9201192 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
|
| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE144454 |
A genome wide screening for effectors of chromatin accessibility |
|
| Relations |
| BioProject |
PRJNA603694 |
| SRA |
SRP245839 |
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