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Series GSE144452 Query DataSets for GSE144452
Status Public on May 01, 2022
Title MNase-seq analyses with TFDP1 knockout eHAP cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary A genome-wide screening identified effector genes of chromatin accessibility. To investigate the functional consequences of the loss of each effector gene, we conducted Mnase-seq with eHAP cells knocked out for TFDP1.
Overall design MNase-seq with spike-in control
Contributor(s) Ishii S, Miyanari Y
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Submission date Jan 29, 2020
Last update date May 02, 2022
Contact name Yusuke Miyanari
Phone 81 76 234 4571
Organization name Kanazawa University
Department NanoLSI
Lab Nuclear Dynamics
Street address Kakuma
City Kanazawa
ZIP/Postal code 9201192
Country Japan
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (4)
GSM4288491 MNase-seq_NC_rep1
GSM4288492 MNase-seq_NC_rep2
GSM4288493 MNase-seq_TFDP1KO_rep1
This SubSeries is part of SuperSeries:
GSE144454 A genome wide screening for effectors of chromatin accessibility
BioProject PRJNA603694
SRA SRP245839

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144452_RAW.tar 1.5 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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