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Series GSE144448 Query DataSets for GSE144448
Status Public on May 01, 2022
Title ATAC-seq analyses with knockout eHAP cells for effector genes
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary A genome-wide screening identified effector genes of chromatin accessibility. To investigate the functional consequences of the loss of each effector gene, we conducted ATAC-seq analysis with eHAP cells knocked out for each effector gene.
 
Overall design ATAC-seq with spike-in control
 
Contributor(s) Ishii S, Miyanari Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 29, 2020
Last update date Nov 18, 2023
Contact name Yusuke Miyanari
E-mail(s) miyanari@staff.kanazawa-u.ac.jp
Phone 81 76 234 4571
Organization name Kanazawa University
Department NanoLSI
Lab Nuclear Dynamics
Street address Kakuma
City Kanazawa
ZIP/Postal code 9201192
Country Japan
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (28)
GSM4288430 ATAC-seq_Group1_NC1_rep1
GSM4288431 ATAC-seq_Group1_NC1_rep2
GSM4288432 ATAC-seq_Group1_TFDP1KO_rep1
This SubSeries is part of SuperSeries:
GSE144454 A genome wide screening for effectors of chromatin accessibility
Relations
BioProject PRJNA603698
SRA SRP245835

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144448_atac.CNOT3.RepMean.bw 128.7 Mb (ftp)(http) BW
GSE144448_atac.DCAF7.RepMean.bw 177.8 Mb (ftp)(http) BW
GSE144448_atac.EIF3D.RepMean.bw 173.0 Mb (ftp)(http) BW
GSE144448_atac.EP400.RepMean.bw 125.6 Mb (ftp)(http) BW
GSE144448_atac.HNRNPU.RepMean.bw 163.4 Mb (ftp)(http) BW
GSE144448_atac.NAA10.RepMean.bw 162.3 Mb (ftp)(http) BW
GSE144448_atac.NC1.RepMean.bw 225.0 Mb (ftp)(http) BW
GSE144448_atac.NC2.RepMean.bw 122.0 Mb (ftp)(http) BW
GSE144448_atac.NC3.RepMean.bw 56.7 Mb (ftp)(http) BW
GSE144448_atac.PARP1.RepMean.bw 219.6 Mb (ftp)(http) BW
GSE144448_atac.SMARCA4.RepMean.bw 46.6 Mb (ftp)(http) BW
GSE144448_atac.TFDP1.RepMean.bw 173.0 Mb (ftp)(http) BW
GSE144448_atac.THAP11.RepMean.bw 110.0 Mb (ftp)(http) BW
GSE144448_atac.UBAP2L.RepMean.bw 148.9 Mb (ftp)(http) BW
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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