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Series GSE142677 Query DataSets for GSE142677
Status Public on Dec 28, 2019
Title AGO HITS-CLIP Reveals Distinct Patterns of miRNA Regulation of Visceral and Brown Adipose Tissue Identity
Organism Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Wildtype mouse adipose tissue was dissected and subjected to Ago-CLIP sequencing to identify Ago:RNA regulatory sites and RNA sequencing. Adipose tissue from a separate cohort of mice was used for small RNA sequencing.
 
Overall design Ago-CLIP sequencing mRNA sequencing analysis for two types of wildtype mouse adipose tissue and miRNA sequencing analysis for six types of wildtype mouse adipose tissue.
 
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Submission date Dec 27, 2019
Last update date Aug 29, 2020
Contact name Sean O'Connor
E-mail(s) soconnor@rockefeller.edu
Organization name Rockefeller University
Department Laboratory of Molecular Metabolism
Lab Paul Cohen
Street address 1230 York Ave
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (3)
GPL16417 Illumina MiSeq (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (35)
GSM4237682 Ago.CLIP_WAT_1t
GSM4237683 Ago.CLIP_WAT_3t
GSM4237684 Ago.CLIP_BAT_4t
Relations
BioProject PRJNA597911
SRA SRP238924

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142677_RAW.tar 24.2 Mb (http)(custom) TAR (of BEDGRAPH)
GSE142677_mRNAseq_processed_data_DEseq.csv.gz 574.0 Kb (ftp)(http) CSV
GSE142677_miRNAseq_processed_data_DEseq.csv.gz 125.3 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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