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Series GSE142677 Query DataSets for GSE142677
Status Public on Dec 28, 2019
Title AGO HITS-CLIP Reveals Distinct Patterns of miRNA Regulation of Visceral and Brown Adipose Tissue Identity
Organism Mus musculus
Experiment type Other
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Wildtype mouse adipose tissue was dissected and subjected to Ago-CLIP sequencing to identify Ago:RNA regulatory sites and RNA sequencing. Adipose tissue from a separate cohort of mice was used for small RNA sequencing.
Overall design Ago-CLIP sequencing mRNA sequencing analysis for two types of wildtype mouse adipose tissue and miRNA sequencing analysis for six types of wildtype mouse adipose tissue.
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Submission date Dec 27, 2019
Last update date Aug 29, 2020
Contact name Sean O'Connor
Organization name Rockefeller University
Department Laboratory of Molecular Metabolism
Lab Paul Cohen
Street address 1230 York Ave
City New York
State/province NY
ZIP/Postal code 10065
Country USA
Platforms (3)
GPL16417 Illumina MiSeq (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (35)
GSM4237682 Ago.CLIP_WAT_1t
GSM4237683 Ago.CLIP_WAT_3t
GSM4237684 Ago.CLIP_BAT_4t
BioProject PRJNA597911
SRA SRP238924

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Supplementary file Size Download File type/resource
GSE142677_RAW.tar 24.2 Mb (http)(custom) TAR (of BEDGRAPH)
GSE142677_mRNAseq_processed_data_DEseq.csv.gz 574.0 Kb (ftp)(http) CSV
GSE142677_miRNAseq_processed_data_DEseq.csv.gz 125.3 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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