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Series GSE124632 Query DataSets for GSE124632
Status Public on Jan 20, 2020
Title DNA methylation analysis in oropharyngeal cancer [EPIC array]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary DNA methylation analysis in oropharyngeal squamous carcinoma (OPSCC) samples and oropharyngeal non-cancerous mucosa samples. Infinium MethylationEPIC BeadChip Kit was used to obtain DNA methylation profiles across more than 850,000 CpG sites. Total samples included 89 OPSCC samples and 5 non-cancerous mucosa samples.
 
Overall design Bisulphite converted DNA from the 25 OPSCC samples were hybridised to the Infinium MethylationEPIC Beadchip Kit.
 
Contributor(s) Nakagawa T, Fukuyo M, Kaneda A
Citation(s) 32012407
Submission date Jan 03, 2019
Last update date Apr 27, 2020
Contact name Masaki Fukuyo
E-mail(s) fukuyo@chiba-u.jp
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (25)
GSM3538152 Genomic DNA from OPSCC sample [MPC_T14]
GSM3538153 Genomic DNA from OPSCC sample [MPC_T31]
GSM3538154 Genomic DNA from OPSCC sample [MPC_T32]
This SubSeries is part of SuperSeries:
GSE124633 DNA methylation analysis in oropharyngeal cancer
Relations
BioProject PRJNA512879

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124632_RAW.tar 161.2 Mb (http)(custom) TAR
GSE124632_unmethylated_methylated_signal_intensities.txt.gz 102.7 Mb (ftp)(http) TXT
Processed data included within Sample table
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