|
Status |
Public on Jan 20, 2020 |
Title |
Genomic DNA from OPSCC sample [MPC_T74] |
Sample type |
genomic |
|
|
Source name |
MPC_T74
|
Organism |
Homo sapiens |
Characteristics |
disease state: oropharyngeal squamous carcinoma (OPSCC) tissue: oropharyngeal cancer gender: male
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted and purified from clinical samples using QIAquick DNA mini kit according to standard instructions.
|
Label |
biotin
|
Label protocol |
Standard Illumina Protocol.
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip Kit using standard Illumina protocol.
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
|
Description |
SAMPLE 15
|
Data processing |
BeadStudio software v3.2.
|
|
|
Submission date |
Jan 03, 2019 |
Last update date |
Jan 20, 2020 |
Contact name |
Masaki Fukuyo |
E-mail(s) |
fukuyo@chiba-u.jp
|
Organization name |
Chiba University
|
Department |
Department of Molecular Oncology
|
Street address |
1-8-1 Inohana, Chuo-ku
|
City |
Chiba |
ZIP/Postal code |
260-8670 |
Country |
Japan |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE124632 |
DNA methylation analysis in oropharyngeal cancer [EPIC array] |
GSE124633 |
DNA methylation analysis in oropharyngeal cancer |
|