|
| Status |
Public on Jan 20, 2020 |
| Title |
Genomic DNA from OPSCC sample [MPC_T82] |
| Sample type |
genomic |
| |
|
| Source name |
MPC_T82
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: oropharyngeal squamous carcinoma (OPSCC)
tissue: oropharyngeal cancer
gender: male
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from clinical samples using QIAquick DNA mini kit according to standard instructions.
|
| Label |
biotin
|
| Label protocol |
Standard Illumina Protocol.
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip Kit using standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
|
| Description |
SAMPLE 23
|
| Data processing |
BeadStudio software v3.2.
|
| |
|
| Submission date |
Jan 03, 2019 |
| Last update date |
Jan 20, 2020 |
| Contact name |
Masaki Fukuyo |
| E-mail(s) |
fukuyo@chiba-u.jp
|
| Organization name |
Chiba University
|
| Department |
Department of Molecular Oncology
|
| Street address |
1-8-1 Inohana, Chuo-ku
|
| City |
Chiba |
| ZIP/Postal code |
260-8670 |
| Country |
Japan |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE124632 |
DNA methylation analysis in oropharyngeal cancer [EPIC array] |
| GSE124633 |
DNA methylation analysis in oropharyngeal cancer |
|
