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Series GSE116784 Query DataSets for GSE116784
Status Public on Feb 06, 2020
Title Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The faithful transmission of genome information is fundamental to the germline stem cell cycle. One exception to this is meiosis when active recombination takes place. This study aims to understand how dna damage responses and meiotic recombination mechanisms are properly coordinated with developmental programs of germ cells by comparing transcriptomic and epigenetic profiles of germline competent pluripotent stem cells, germline stem cells and somatic cells etc. in mice.
Overall design Histone modification and transcription factor binding profiles of mouse germline stem (GS) cells treated with or without retinoic acid were generated by Illumina deep sequencing.
Contributor(s) Chuma S, Hosokawa M
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Submission date Jul 09, 2018
Last update date Feb 07, 2020
Contact name Shinichiro Chuma
Phone +81-75-751-3821
Organization name Kyoto university
Department Institute for Frontier Life and Medical Sciences
Lab Laboratory of Developmental Epigenome
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
State/province Kyoto
ZIP/Postal code 606-8507
Country Japan
Platforms (2)
GPL11002 Illumina Genome Analyzer IIx (Mus musculus)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (12)
GSM3261895 GS control RAR
GSM3261896 GS control H3K4me3
GSM3261897 GS control H3K27me3
This SubSeries is part of SuperSeries:
GSE116798 Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice
BioProject PRJNA480262
SRA SRP152839

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116784_RAW.tar 4.4 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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