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Status
Public on Apr 16, 2009
Title
UNC PerouLab 244K Custom Human Array version 5
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
Agilent Technology (see manufacturer's website)
Contributor(s)
Perou C Submission date
Mar 09, 2009
Last update date
Jul 17, 2015
Contact name
Charles M. Perou
E-mail(s)
cperou@med.unc.edu Organization name
University of North Carolina at Chapel Hill
Department
Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address
12-044 Lineberger Comprehensive Cancer Center CB# 7295
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-7264
Country
USA
Samples (442)
GSM403189 , GSM403190 , GSM403191 , GSM403192 , GSM403193 , GSM403194
GSM403195 ,
GSM403196 ,
GSM403197 ,
GSM403198 ,
GSM403199 ,
GSM403200 ,
GSM403201 ,
GSM555393 ,
GSM555394 ,
GSM555400 ,
GSM555401 ,
GSM555409 ,
GSM555410 ,
GSM555411 ,
GSM555435 ,
GSM555436 ,
GSM555437 ,
GSM555438 ,
GSM555439 ,
GSM555440 ,
GSM555441 ,
GSM555442 ,
GSM555443 ,
GSM555444 ,
GSM555445 ,
GSM555446 ,
GSM555447 ,
GSM555448 ,
GSM555449 ,
GSM555450 ,
GSM555451 ,
GSM555452 ,
GSM555453 ,
GSM555456 ,
GSM555457 ,
GSM555462 ,
GSM555463 ,
GSM555464 ,
GSM555465 ,
GSM555474 ,
GSM555481 ,
GSM555490 ,
GSM555494 ,
GSM555495 ,
GSM555496 ,
GSM555497 ,
GSM555498 ,
GSM555499 ,
GSM555500 ,
GSM555501 ,
GSM555502 ,
GSM555503 ,
GSM555532 ,
GSM555533 ,
GSM608138 ,
GSM608168 ,
GSM608169 ,
GSM608170 ,
GSM608171 ,
GSM608172 ,
GSM608173 ,
GSM608174 ,
GSM608175 ,
GSM608176 ,
GSM608177 ,
GSM608178 ,
GSM608179 ,
GSM608180 ,
GSM608181 ,
GSM608182 ,
GSM608183 ,
GSM608184 ,
GSM847887 ,
GSM847888 ,
GSM847890 ,
GSM847891 ,
GSM847892 ,
GSM847893 ,
GSM847894 ,
GSM847895 ,
GSM847896 ,
GSM847898 ,
GSM847901 ,
GSM847902 ,
GSM847903 ,
GSM847904 ,
GSM847905 ,
GSM847907 ,
GSM847908 ,
GSM847909 ,
GSM847911 ,
GSM847914 ,
GSM847915 ,
GSM847917 ,
GSM847919 ,
GSM847920 ,
GSM847921 ,
GSM847922 ,
GSM847923 ,
GSM847924 ,
GSM847925 ,
GSM848100 ,
GSM848101 ,
GSM848102 ,
GSM848103 ,
GSM848104 ,
GSM848105 ,
GSM848106 ,
GSM848107 ,
GSM848108 ,
GSM848109 ,
GSM848110 ,
GSM848111 ,
GSM848112 ,
GSM848113 ,
GSM848114 ,
GSM848115 ,
GSM848116 ,
GSM848117 ,
GSM848118 ,
GSM848119 ,
GSM848120 ,
GSM848121 ,
GSM848122 ,
GSM848123 ,
GSM848124 ,
GSM848125 ,
GSM848126 ,
GSM848127 ,
GSM848128 ,
GSM848129 ,
GSM848130 ,
GSM904701 ,
GSM904702 ,
GSM904703 ,
GSM904704 ,
GSM904705 ,
GSM904706 ,
GSM904707 ,
GSM904708 ,
GSM904709 ,
GSM904710 ,
GSM904711 ,
GSM904712 ,
GSM904713 ,
GSM904714 ,
GSM904715 ,
GSM904716 ,
GSM904717 ,
GSM946830 ,
GSM946831 ,
GSM946832 ,
GSM946833 ,
GSM946834 ,
GSM946835 ,
GSM946836 ,
GSM946837 ,
GSM946838 ,
GSM946951 ,
GSM946952 ,
GSM946953 ,
GSM946954 ,
GSM946955 ,
GSM946956 ,
GSM946957 ,
GSM946958 ,
GSM946959 ,
GSM946960 ,
GSM946961 ,
GSM946962 ,
GSM946963 ,
GSM946964 ,
GSM946965 ,
GSM946966 ,
GSM946967 ,
GSM946968 ,
GSM946969 ,
GSM946970 ,
GSM946971 ,
GSM946972 ,
GSM946973 ,
GSM946974 ,
GSM946975 ,
GSM946976 ,
GSM946977 ,
GSM946978 ,
GSM946979 ,
GSM946980 ,
GSM947334 ,
GSM947335 ,
GSM947336 ,
GSM947337 ,
GSM947338 ,
GSM947339 ,
GSM947340 ,
GSM947341 ,
GSM947342 ,
GSM947343 ,
GSM947344 ,
GSM947345 ,
GSM947346 ,
GSM947347 ,
GSM947348 ,
GSM947349 ,
GSM947617 ,
GSM947618 ,
GSM947619 ,
GSM947620 ,
GSM947621 ,
GSM947622 ,
GSM947623 ,
GSM947624 ,
GSM947625 ,
GSM947626 ,
GSM947627 ,
GSM947628 ,
GSM947629 ,
GSM947630 ,
GSM947631 ,
GSM947632 ,
GSM947633 ,
GSM947634 ,
GSM947635 ,
GSM947636 ,
GSM947637 ,
GSM947673 ,
GSM947674 ,
GSM947675 ,
GSM947676 ,
GSM947677 ,
GSM947678 ,
GSM947679 ,
GSM947680 ,
GSM947681 ,
GSM947682 ,
GSM947683 ,
GSM947684 ,
GSM947685 ,
GSM947686 ,
GSM947687 ,
GSM947688 ,
GSM947689 ,
GSM947690 ,
GSM947691 ,
GSM947692 ,
GSM947693 ,
GSM947694 ,
GSM947695 ,
GSM947696 ,
GSM947697 ,
GSM947698 ,
GSM947699 ,
GSM947700 ,
GSM947701 ,
GSM947702 ,
GSM947703 ,
GSM947704 ,
GSM947705 ,
GSM947769 ,
GSM947770 ,
GSM947771 ,
GSM947772 ,
GSM947773 ,
GSM947774 ,
GSM947775 ,
GSM947776 ,
GSM947777 ,
GSM947778 ,
GSM947779 ,
GSM947780 ,
GSM947781 ,
GSM947782 ,
GSM947783 ,
GSM947784 ,
GSM947785 ,
GSM947786 ,
GSM947787 ,
GSM947788 ,
GSM947789 ,
GSM947790 ,
GSM947791 ,
GSM947792 ,
GSM947793 ,
GSM947794 ,
GSM947795 ,
GSM947796 ,
GSM947797 ,
GSM947810 ,
GSM947811 ,
GSM947812 ,
GSM947813 ,
GSM947814 ,
GSM947815 ,
GSM947816 ,
GSM947817 ,
GSM947818 ,
GSM947819 ,
GSM947820 ,
GSM947821 ,
GSM947822 ,
GSM947823 ,
GSM947824 ,
GSM947825 ,
GSM947826 ,
GSM947827 ,
GSM947828 ,
GSM947829 ,
GSM947830 ,
GSM947831 ,
GSM947832 ,
GSM947833 ,
GSM947834 ,
GSM947835 ,
GSM947836 ,
GSM947837 ,
GSM947838 ,
GSM947839 ,
GSM947840 ,
GSM947841 ,
GSM947842 ,
GSM947843 ,
GSM947844 ,
GSM947845 ,
GSM947846 ,
GSM947847 ,
GSM947848 ,
GSM947873 ,
GSM947874 ,
GSM947875 ,
GSM947876 ,
GSM947877 ,
GSM947878 ,
GSM947879 ,
GSM947880 ,
GSM947881 ,
GSM947882 ,
GSM947883 ,
GSM947884 ,
GSM947885 ,
GSM947886 ,
GSM947887 ,
GSM947888 ,
GSM947889 ,
GSM947890 ,
GSM947891 ,
GSM947892 ,
GSM947893 ,
GSM947894 ,
GSM947895 ,
GSM947896 ,
GSM947897 ,
GSM947898 ,
GSM947899 ,
GSM947900 ,
GSM947901 ,
GSM947902 ,
GSM947903 ,
GSM947904 ,
GSM947905 ,
GSM947906 ,
GSM947907 ,
GSM947908 ,
GSM947909 ,
GSM947910 ,
GSM947911 ,
GSM947912 ,
GSM947913 ,
GSM947914 ,
GSM947915 ,
GSM1008890 ,
GSM1008891 ,
GSM1008892 ,
GSM1008893 ,
GSM1008894 ,
GSM1008895 ,
GSM1008896 ,
GSM1008897 ,
GSM1008898 ,
GSM1008899 ,
GSM1008900 ,
GSM1008901 ,
GSM1008902 ,
GSM1008903 ,
GSM1008904 ,
GSM1008905 ,
GSM1008906 ,
GSM1008907 ,
GSM1008908 ,
GSM1008909 ,
GSM1008910 ,
GSM1008911 ,
GSM1008912 ,
GSM1008913 ,
GSM1008914 ,
GSM1008915 ,
GSM1008916 ,
GSM1008917 ,
GSM1008918 ,
GSM1008919 ,
GSM1008920 ,
GSM1008921 ,
GSM1008922 ,
GSM1008923 ,
GSM1041239 ,
GSM1041268 ,
GSM1041269 ,
GSM1041270 ,
GSM1041271 ,
GSM1041272 ,
GSM1041273 ,
GSM1041274 ,
GSM1041275 ,
GSM1041276 ,
GSM1041279 ,
GSM1041280 ,
GSM1275925 ,
GSM1275926 ,
GSM1275927 ,
GSM1275928 ,
GSM1275929 ,
GSM1275930 ,
GSM1275931 ,
GSM1275932 ,
GSM1275933 ,
GSM1275934 ,
GSM1275935 ,
GSM1275936 ,
GSM1275937 ,
GSM1275938 ,
GSM1275939 ,
GSM1275940 ,
GSM1331669 ,
GSM1331670 ,
GSM1331671 ,
GSM1331672 ,
GSM1331673 Series (11)
GSE16113 Activation of Host Wound Responses in Breast Cancer Microenvironment
GSE22384 Systematic Bias in Genomic Classification Due to Contaminating Normal Tissue in Breast Tumor Samples
GSE26411 Interactions with Fibroblasts are Distinct in Basal-like and Luminal Breast Cancers
GSE31589 Expression of Epithelial-to-Mesenchymal Transition (EMT)-associated genes in extratumoral microenvironment predicts poor clinical outcome in breast cancer patients
GSE34412 A Renewable Tissue Resource of Phenotypically Stable, Biologically and Ethnically Diverse, Patient-derived Human Breast Cancer Xenografts
GSE36889 Micro-scale genomic copy number aberrations as another means of mutagenesis in breast cancer
GSE41119 Molecular Characterization of Basal-like and Non-Basal-like Triple-Negative Breast Cancers
GSE43467 Role of HGF in epithelial-stromal cell interactions during progression from benign breast disease to ductal carcinoma in situ
GSE46604 Xenografting of advanced stage breast cancer preserves the genomic and clonal architecture and captures luminal tumors harboring mutations and gene rearrangements in ESR1
GSE51783 Comparison of Poly(A) capture versus Ribosomal RNA depletion methods for RNA-seq
GSE52783 Over-expression of miR-146a in basal-like breast cancer cells confers enhanced tumorigenic potential in association with altered p53 status
Data table header descriptions ID GB_ACC GenBank Accession Number
SPOT_ID Public id GeneBank Accession number
Probe NAME Agilent Probe Name
Blast Gene ID Gene ID
Blast Refseq ID Refseq ID
Blast Gene Symbol Gene Symbol
Blast Gene Description Gene Description
Blast Chromosome Map Location Chromosome Map Location
Data table ID GB_ACC SPOT_ID Public id Probe NAME Blast Gene ID Blast Refseq ID Blast Gene Symbol Blast Gene Description Blast Chromosome Map Location 1
--GE_BRIGHTCORNER
GE_BRIGHTCORNER
GE_BRIGHTCORNER
GE_BrightCorner
2
--DARKCORNER
DARKCORNER
DARKCORNER
DarkCorner
3
--DARKCORNER
DARKCORNER
DARKCORNER
DarkCorner
4
NM_017776 NM_017776
A_23_P217151
55634
NM_017776.1
ZNF673
zinc finger protein 673
Xp11.3
5
--EMPTY
EMPTY
EMPTY
EMPTY
EMPTY
6
--A_23_P996
A_23_P996
A_23_P996
7
--UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
8
BC036702 BC036702
A_32_P542060
9
BM697215 BM697215
A_32_P91005
10
--UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
11
--VIRS_10004427
VIRS_10004427
VIRS_10004427
12
--UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
13
--EMPTY
EMPTY
EMPTY
EMPTY
EMPTY
14
--VIRS_10007621
VIRS_10007621
VIRS_10007621
15
--A_32_P151131
A_32_P151131
A_32_P151131
16
--UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
17
XR_016297 XR_016297
A_24_P187453
402222
XR_019180.1|XR_016297.1
LOC402222
similar to ATP-dependent RNA helicase DDX18 (DEAD box protein 18) (Myc-regulated DEAD box protein) (MrDb)
5q21.1
18
--UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
19
--UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
UNIDENTIFIED
20
NM_031922 NM_031922
A_23_P70750
85021
NM_031922.2
REPS1
RALBP1 associated Eps domain containing 1
-
243504 21965 Kbytes .Supplementary data files not provided
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