GEO help: Mouse over screen elements for information.
Status
Public on Mar 11, 2002
Title
[Hu6800] Affymetrix Human Full Length HuGeneFL Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 7129 entries and was indexed 29-Jan-2002. Probes represent approximately 5,000 full-length human sequences. Keywords = high density oligonucleotide array July 08, 2016: annotation table updated with netaffx build 35
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=hugenefl http://www.affymetrix.com/analysis/index.affx
Submission date
Feb 19, 2002
Last update date
Jul 08, 2016
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (1490)
GSM575 , GSM576 , GSM577 , GSM578 , GSM579 , GSM2289
GSM2294 ,
GSM2299 ,
GSM2304 ,
GSM2309 ,
GSM2313 ,
GSM2318 ,
GSM2323 ,
GSM2328 ,
GSM2333 ,
GSM2474 ,
GSM2475 ,
GSM2476 ,
GSM2477 ,
GSM2478 ,
GSM2479 ,
GSM2480 ,
GSM2481 ,
GSM2482 ,
GSM2483 ,
GSM2484 ,
GSM2485 ,
GSM2486 ,
GSM2487 ,
GSM2488 ,
GSM2489 ,
GSM2490 ,
GSM2491 ,
GSM2492 ,
GSM2493 ,
GSM2494 ,
GSM2495 ,
GSM2496 ,
GSM2497 ,
GSM2498 ,
GSM2499 ,
GSM2500 ,
GSM2501 ,
GSM2502 ,
GSM2503 ,
GSM2504 ,
GSM2505 ,
GSM2506 ,
GSM2507 ,
GSM2508 ,
GSM2509 ,
GSM2510 ,
GSM2511 ,
GSM2512 ,
GSM2513 ,
GSM2514 ,
GSM2515 ,
GSM2516 ,
GSM2517 ,
GSM2518 ,
GSM2519 ,
GSM2520 ,
GSM2521 ,
GSM2522 ,
GSM2523 ,
GSM2524 ,
GSM2525 ,
GSM2526 ,
GSM2527 ,
GSM2528 ,
GSM2529 ,
GSM2530 ,
GSM2531 ,
GSM2532 ,
GSM2533 ,
GSM2534 ,
GSM2535 ,
GSM2536 ,
GSM2537 ,
GSM2538 ,
GSM2539 ,
GSM2540 ,
GSM2541 ,
GSM2542 ,
GSM2543 ,
GSM2544 ,
GSM2546 ,
GSM2547 ,
GSM2548 ,
GSM2549 ,
GSM2550 ,
GSM2551 ,
GSM2552 ,
GSM2553 ,
GSM2554 ,
GSM2555 ,
GSM2556 ,
GSM2557 ,
GSM2591 ,
GSM2595 ,
GSM2597 ,
GSM2599 ,
GSM2601 ,
GSM2602 ,
GSM2603 ,
GSM2604 ,
GSM2605 ,
GSM2606 ,
GSM2607 ,
GSM2608 ,
GSM2609 ,
GSM2610 ,
GSM2611 ,
GSM2612 ,
GSM2613 ,
GSM2614 ,
GSM2615 ,
GSM2616 ,
GSM2617 ,
GSM2618 ,
GSM2619 ,
GSM2620 ,
GSM2621 ,
GSM2622 ,
GSM2623 ,
GSM2624 ,
GSM2625 ,
GSM2626 ,
GSM2782 ,
GSM2783 ,
GSM2784 ,
GSM2785 ,
GSM2786 ,
GSM2787 ,
GSM2788 ,
GSM2789 ,
GSM2790 ,
GSM2791 ,
GSM2792 ,
GSM2793 ,
GSM2794 ,
GSM2795 ,
GSM2796 ,
GSM2797 ,
GSM2798 ,
GSM2799 ,
GSM2800 ,
GSM2801 ,
GSM2802 ,
GSM2803 ,
GSM2804 ,
GSM2805 ,
GSM2806 ,
GSM2807 ,
GSM2808 ,
GSM2809 ,
GSM2810 ,
GSM2811 ,
GSM2812 ,
GSM2813 ,
GSM2814 ,
GSM2815 ,
GSM2816 ,
GSM2817 ,
GSM4358 ,
GSM4359 ,
GSM4360 ,
GSM4361 ,
GSM4362 ,
GSM4365 ,
GSM4366 ,
GSM4369 ,
GSM4370 ,
GSM4371 ,
GSM5157 ,
GSM5158 ,
GSM5159 ,
GSM5160 ,
GSM5161 ,
GSM5162 ,
GSM5163 ,
GSM5164 ,
GSM5165 ,
GSM5166 ,
GSM5167 ,
GSM5168 ,
GSM5169 ,
GSM5170 ,
GSM5171 ,
GSM5172 ,
GSM5173 ,
GSM5174 ,
GSM5175 ,
GSM5176 ,
GSM6826 ,
GSM6827 ,
GSM6828 ,
GSM6829 ,
GSM6830 ,
GSM6831 ,
GSM6832 ,
GSM6833 ,
GSM6834 ,
GSM6835 ,
GSM6836 ,
GSM11625 ,
GSM11757 ,
GSM11758 ,
GSM11759 ,
GSM11760 ,
GSM11761 ,
GSM11762 ,
GSM11763 ,
GSM11764 ,
GSM11765 ,
GSM11766 ,
GSM11767 ,
GSM11768 ,
GSM11769 ,
GSM11770 ,
GSM11771 ,
GSM11772 ,
GSM11773 ,
GSM11774 ,
GSM11775 ,
GSM11776 ,
GSM11777 ,
GSM11778 ,
GSM11779 ,
GSM12587 ,
GSM12588 ,
GSM12589 ,
GSM12590 ,
GSM12591 ,
GSM12592 ,
GSM12593 ,
GSM12594 ,
GSM12595 ,
GSM12596 ,
GSM12597 ,
GSM12598 ,
GSM12599 ,
GSM12600 ,
GSM12601 ,
GSM12602 ,
GSM12603 ,
GSM12604 ,
GSM12605 ,
GSM12606 ,
GSM15043 ,
GSM15044 ,
GSM15045 ,
GSM15046 ,
GSM15616 ,
GSM15617 ,
GSM15618 ,
GSM15619 ,
GSM15620 ,
GSM15621 ,
GSM15622 ,
GSM15623 ,
GSM15624 ,
GSM15625 ,
GSM15626 ,
GSM15627 ,
GSM15628 ,
GSM15629 ,
GSM15630 ,
GSM15631 ,
GSM15632 ,
GSM15633 ,
GSM15634 ,
GSM15635 ,
GSM15636 ,
GSM15637 ,
GSM15638 ,
GSM15639 ,
GSM15640 ,
GSM15641 ,
GSM15642 ,
GSM15643 ,
GSM15644 ,
GSM15645 ,
GSM18403 ,
GSM18404 ,
GSM18405 ,
GSM18406 ,
GSM18407 ,
GSM18408 ,
GSM18409 ,
GSM18410 ,
GSM18411 ,
GSM18412 ,
GSM18413 ,
GSM18414 ,
GSM18415 ,
GSM18416 ,
GSM18417 ,
GSM23216 ,
GSM23217 ,
GSM23218 ,
GSM30459 ,
GSM30460 ,
GSM30461 ,
GSM30462 ,
GSM30463 ,
GSM30464 ,
GSM30465 ,
GSM30466 ,
GSM30467 ,
GSM30468 ,
GSM30937 ,
GSM30938 ,
GSM30939 ,
GSM30940 ,
GSM30941 ,
GSM30942 ,
GSM30946 ,
GSM30947 ,
GSM30948 ,
GSM30949 ,
GSM30950 ,
GSM30951 ,
GSM42180 ,
GSM42181 ,
GSM42182 ,
GSM42183 ,
GSM42184 ,
GSM42185 ,
GSM42186 ,
GSM42187 ,
GSM42188 ,
GSM42189 ,
GSM42190 ,
GSM42191 ,
GSM42192 ,
GSM42193 ,
GSM42194 ,
GSM42195 ,
GSM42196 ,
GSM42197 ,
GSM42198 ,
GSM42199 ,
GSM42200 ,
GSM42201 ,
GSM42202 ,
GSM42203 ,
GSM42204 ,
GSM42205 ,
GSM42206 ,
GSM42207 ,
GSM42208 ,
GSM42209 ,
GSM42210 ,
GSM42211 ,
GSM42212 ,
GSM42213 ,
GSM42214 ,
GSM42215 ,
GSM42216 ,
GSM42217 ,
GSM42218 ,
GSM42219 ,
GSM42220 ,
GSM42221 ,
GSM42304 ,
GSM51763 ,
GSM51764 ,
GSM51765 ,
GSM51766 ,
GSM51767 ,
GSM51768 ,
GSM51769 ,
GSM51770 ,
GSM51771 ,
GSM51772 ,
GSM51773 ,
GSM51774 ,
GSM51775 ,
GSM51776 ,
GSM51777 ,
GSM51778 ,
GSM51779 ,
GSM51780 ,
GSM51781 ,
GSM51782 ,
GSM51783 ,
GSM51784 ,
GSM51785 ,
GSM51786 ,
GSM51787 ,
GSM51788 ,
GSM51789 ,
GSM51790 ,
GSM51791 ,
GSM51792 ,
GSM68108 ,
GSM68109 ,
GSM71942 ,
GSM71991 ,
GSM72243 ,
GSM72244 ,
GSM72245 ,
GSM72246 ,
GSM72247 ,
GSM72248 ,
GSM72249 ,
GSM72250 ,
GSM114034 ,
GSM114035 ,
GSM114036 ,
GSM114037 ,
GSM114038 ,
GSM114039 ,
GSM114040 ,
GSM114041 ,
GSM114042 ,
GSM114043 ,
GSM114044 ,
GSM114045 ,
GSM114046 ,
GSM114047 ,
GSM114048 ,
GSM114049 ,
GSM114050 ,
GSM114051 ,
GSM114052 ,
GSM114053 ,
GSM114054 ,
GSM114055 ,
GSM114056 ,
GSM114057 ,
GSM114058 ,
GSM114059 ,
GSM114060 ,
GSM114061 ,
GSM114062 ,
GSM114063 ,
GSM114064 ,
GSM114065 ,
GSM114066 ,
GSM114067 ,
GSM114068 ,
GSM114069 ,
GSM114070 ,
GSM114071 ,
GSM114072 ,
GSM114073 ,
GSM114074 ,
GSM114075 ,
GSM114076 ,
GSM114077 ,
GSM132286 ,
GSM132287 ,
GSM132288 ,
GSM132289 ,
GSM132290 ,
GSM132291 ,
GSM132292 ,
GSM132293 ,
GSM132294 ,
GSM132295 ,
GSM132296 ,
GSM132297 ,
GSM157225 ,
GSM157226 ,
GSM157227 ,
GSM157228 ,
GSM157229 ,
GSM157230 ,
GSM157231 ,
GSM157232 ,
GSM157233 ,
GSM157234 ,
GSM157235 ,
GSM157236 ,
GSM157237 ,
GSM157238 ,
GSM157239 ,
GSM157240 ,
GSM157241 ,
GSM157242 ,
GSM157243 ,
GSM157244 ,
GSM157245 ,
GSM157246 ,
GSM157247 ,
GSM157248 ,
GSM157249 ,
GSM157250 ,
GSM157251 ,
GSM157252 ,
GSM157253 ,
GSM157254 ,
GSM157255 ,
GSM157256 ,
GSM157257 ,
GSM157258 ,
GSM157259 ,
GSM157260 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (57)
GSE64
Insulin sensitive muscle sample pool 1
GSE65
Insulin sensitive muscle sample pool 2
GSE66
Insulin sensitive muscle sample pool 3
GSE67
Insulin sensitive muscle sample pool 4
GSE68
Insulin sensitive muscle sample pool 5
GSE69
Insulin resistant muscle sample pool 1
GSE70
Insulin resistant muscle sample pool 2
GSE71
Insulin resistant muscle sample pool 3
GSE72
Insulin resistant muscle sample pool 4
GSE73
Insulin resistant muscle sample pool 5
GSE88
Bladder tumour recurrence prediction
GSE89
Bladder tumour stage classification
GSE90
Expression profiling by p53 status
GSE121
Type 2 diabetes and insulin resistance
GSE361
Mammary epithelial cell transduction
GSE493
Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis
GSE500
CD34+ cell analysis
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
GSE512
Peripheral Blood Mononuclear Cells of Rhesus Macaques Infected with SIVmac251
GSE703
Blood pulmonary arterial hypertension
GSE764
Comparison of Gene Expression in Uterine Smooth Muscle Tumors
GSE833
Amyotrophic lateral sclerosis
GSE951
267B1, PC3M, LNCaP Methylation Profile vs. mRNA Expression Level
GSE983
Gene Expression-Based High Throughput Screening: Primary Patient AML Blasts, Normal Neutrophils, and Normal Monocytes
GSE985
Gene Expression-Based High Throughput Screening: HL-60 Cells Treated with ATRA and PMA
GSE995
Differentiation of acute myeloid leukemia cells
GSE1122
Emphysema Lung Tissue Gene Expression Profiling
GSE1403
Cyclosporine A timecourse 0, 12, 48 hours
GSE1746
CD14+ cell analysis
GSE1792
Melanoma progression model: Differential Gene Expression
GSE1793
Melanoma progression model:DAC-mediated gene expression
GSE2282
Kidney development time course
GSE2649
NO2 study
GSE2685
Global gene expression analysis of gastric cancer by oligonucleotide microarrays
GSE3212
Gene expression in alveolar macrophages from phenotypically normal smokers compared to non-smokers
GSE5056
Airway epithelium, large airways, phenotypically normal smokers vs non-smokers, MAS5 (HuGeneFL)
GSE5060
Airway epithelium, large and small airways, phenotypically normal smokers, non-smokers, early COPD and COPD
GSE5663
Molecular Diagnostics in Sepsis: from Bedside to Bench
GSE6822
Classification of ovarian tumor samples
GSE7146
Effect of insulin infusion on human skeletal muscle
GSE9511
Characterization of Plexiform Leiomyomata Provide Further Evidence for Genetic Heterogeneity Underlying Uterine Fibroids
GSE10135
Cigarette Smoking Induces Overexpression of a Fat Depleting Gene AZGP1 in the Human Airway Epithelium
GSE11543
Microsatellite stable (n=38) and instable-high (n=13) human colorectal tumors assayed with Affymetrix HuGeneFL arrays.
GSE12245
Similarity of Gene Expression Patterns in Human Alveolar Macrophages in Response to P. aeruginosa and B. cepacia
GSE21340
Human skeletal muscle - type 2 diabetes and family history positive individuals - Mexican American
GSE26571
Peroxireduxin-4 is over-expressed in colon cancer and its down-regulation leads to apoptosis
GSE33880
Expression data from the T84 human intestinal epithelial cell line
GSE34928
Gene Expression in Normal and Tumor Ovarian Epithelial Cells from Non-carriers and Heterozygous Carriers of a BRCA French Canadian Mutation.
GSE54558
Lipopolysaccharide modulates rhinovirus-induced chemokine secretion in monocytes and macrophages.
GSE68571
caArray_beer-00153: Gene-expression profiles predict survival of patients with lung adenocarcinoma
GSE68600
caArray_cho-00156: Gene Expression in Ovarian Cancer Reflects Both Morphology and Biological Behavior
GSE68895
caArray_golub-00095: Diffuse large B-cell lymphoma outcome prediction
GSE68928
caArray_golub-00236: Multiclass cancer diagnosis using tumor gene expression signatures
GSE68936
caArray_golub-00299: Chemosensitivity prediction by transcriptional profiling
GSE68956
caArray_golub-00460: Prediction of central nervous system embryonal tumour outcome based on gene expression
GSE70231
caArray_hanas-00078: Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis
GSE70284
caArray_krahe-00060: Expression profiling reveals fundamental biological differences in acute myeloid leukemia
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
identifies controls
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
GB_ACC
SPOT_ID
Species Scientific Name
Annotation Date
Sequence Type
Sequence Source
Target Description
Representative Public ID
Gene Title
Gene Symbol
ENTREZ_GENE_ID
RefSeq Transcript ID
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
A28102_at
A28102
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
A28102, class A, 20 probes, 16 in A28102cds 986-1442: 4 in reverseSequence, 1546-1582, Human GABAa receptor alpha-3 subunit.
A28102
gamma-aminobutyric acid (GABA) A receptor, alpha 3
GABRA3
2556
NM_000808 /// XM_005274659 /// XM_006724811
0006810 // transport // traceable author statement /// 0006811 // ion transport // inferred from electronic annotation /// 0006821 // chloride transport // inferred from electronic annotation /// 0007214 // gamma-aminobutyric acid signaling pathway // inferred from electronic annotation /// 0007268 // synaptic transmission // traceable author statement /// 0034220 // ion transmembrane transport // traceable author statement /// 0055085 // transmembrane transport // traceable author statement /// 1902476 // chloride transmembrane transport // inferred from electronic annotation
0005886 // plasma membrane // traceable author statement /// 0005887 // integral component of plasma membrane // traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0034707 // chloride channel complex // inferred from electronic annotation /// 0045202 // synapse // inferred from electronic annotation /// 0045211 // postsynaptic membrane // inferred from electronic annotation
0004890 // GABA-A receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // inferred from electronic annotation /// 0008503 // benzodiazepine receptor activity // traceable author statement
AB000114_at
AB000114
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000114, class A, 20 probes, 20 in AB000114 1818-2208, Human mRNA for osteomodulin, complete cds
AB000114
osteomodulin
OMD
4958
NM_005014
0005975 // carbohydrate metabolic process // traceable author statement /// 0007155 // cell adhesion // inferred from electronic annotation /// 0018146 // keratan sulfate biosynthetic process // traceable author statement /// 0030203 // glycosaminoglycan metabolic process // traceable author statement /// 0042339 // keratan sulfate metabolic process // traceable author statement /// 0042340 // keratan sulfate catabolic process // traceable author statement /// 0044281 // small molecule metabolic process // traceable author statement
0005576 // extracellular region // traceable author statement /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005796 // Golgi lumen // traceable author statement /// 0043202 // lysosomal lumen // traceable author statement
0005515 // protein binding // inferred from electronic annotation
AB000115_at
AB000115
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000115, class A, 20 probes, 20 in AB000115 1469-1973, Human mRNA, complete cds
AB000115
interferon-induced protein 44-like
IFI44L
10964
NM_006820 /// XM_005270391 /// XM_005270392 /// XM_005270393 /// XM_006710303 /// XM_006710304
0006955 // immune response // inferred from electronic annotation /// 0051607 // defense response to virus // inferred from electronic annotation
0005737 // cytoplasm // inferred from electronic annotation
AB000220_at
AB000220
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000220, class A, 20 probes, 20 in AB000220 4588-5134, Human mRNA for semaphorin E, complete cds
AB000220
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
SEMA3C
10512
NM_006379 /// XM_005250113
0001755 // neural crest cell migration // inferred from electronic annotation /// 0001756 // somitogenesis // inferred from electronic annotation /// 0001974 // blood vessel remodeling // inferred from electronic annotation /// 0003151 // outflow tract morphogenesis // inferred from electronic annotation /// 0003215 // cardiac right ventricle morphogenesis // inferred from electronic annotation /// 0003350 // pulmonary myocardium development // inferred from electronic annotation /// 0006955 // immune response // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0007411 // axon guidance // inferred from sequence or structural similarity /// 0007507 // heart development // inferred from electronic annotation /// 0009791 // post-embryonic development // inferred from electronic annotation /// 0021915 // neural tube development // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0042493 // response to drug // traceable author statement /// 0060174 // limb bud formation // inferred from electronic annotation /// 0060666 // dichotomous subdivision of terminal units involved in salivary gland branching // inferred from electronic annotation
0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation
0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0030215 // semaphorin receptor binding // inferred from electronic annotation
AB000381_s_at
AB000381
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000381, class A, 20 probes, 19 in AB000381exon#2-4 45-395: 1 not in GB record, Human DNA for GPI-anchored molecule-like protein, complete cds
AB000381
glycosylphosphatidylinositol anchored molecule like
GML
2765
NM_002066
0006915 // apoptotic process // traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // traceable author statement /// 0008285 // negative regulation of cell proliferation // traceable author statement
0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic component of membrane // traceable author statement /// 0031225 // anchored component of membrane // inferred from electronic annotation
AB000409_at
AB000409
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000409, class A, 20 probes, 20 in AB000409 2046-2538, Human mRNA for MNK1, complete cds
AB000409
MAP kinase interacting serine/threonine kinase 1
MKNK1
8569
NM_001135553 /// NM_003684 /// NM_198973 /// NR_024174 /// NR_024175 /// NR_024176 /// XM_006710999 /// XM_006711000 /// XM_006711001 /// XM_006711002 /// XM_006711003 /// XM_006711004 /// XM_006711005 /// XM_006711006 /// XM_006711007 /// XM_006711008 /// XM_006711009 /// XM_006711010 /// XM_006711011 /// XM_006711012 /// XM_006711013 /// XM_006711014 /// XM_006711015 /// XR_426637
0006417 // regulation of translation // inferred from electronic annotation /// 0006468 // protein phosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation /// 0008543 // fibroblast growth factor receptor signaling pathway // traceable author statement /// 0009103 // lipopolysaccharide biosynthetic process // inferred from electronic annotation /// 0009651 // response to salt stress // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // inferred from direct assay /// 0035556 // intracellular signal transduction // inferred from direct assay /// 0097192 // extrinsic apoptotic signaling pathway in absence of ligand // inferred from electronic annotation
0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0016020 // membrane // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation
AB000410_s_at
AB000410
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000410, class A, 20 probes, 20 in AB000410mRNA 947-1442, Human hOGG1 mRNA, complete cds
AB000410
8-oxoguanine DNA glycosylase
OGG1
4968
NM_002542 /// NM_016819 /// NM_016820 /// NM_016821 /// NM_016826 /// NM_016827 /// NM_016828 /// NM_016829 /// XM_005265185
0000737 // DNA catabolic process, endonucleolytic // inferred from electronic annotation /// 0000737 // DNA catabolic process, endonucleolytic // traceable author statement /// 0002526 // acute inflammatory response // inferred from electronic annotation /// 0006281 // DNA repair // traceable author statement /// 0006284 // base-excision repair // traceable author statement /// 0006285 // base-excision repair, AP site formation // traceable author statement /// 0006289 // nucleotide-excision repair // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // inferred from electronic annotation /// 0006468 // protein phosphorylation // traceable author statement /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007165 // signal transduction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007399 // nervous system development // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0009314 // response to radiation // inferred from direct assay /// 0010976 // positive regulation of neuron projection development // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032355 // response to estradiol // inferred from electronic annotation /// 0032880 // regulation of protein localization // inferred from direct assay /// 0033158 // regulation of protein import into nucleus, translocation // inferred from direct assay /// 0042493 // response to drug // inferred from electronic annotation /// 0043393 // regulation of protein binding // inferred from direct assay /// 0045007 // depurination // traceable author statement /// 0045471 // response to ethanol // inferred from electronic annotation /// 0046827 // positive regulation of protein export from nucleus // inferred from electronic annotation /// 0051147 // regulation of muscle cell differentiation // inferred from direct assay /// 0051149 // positive regulation of muscle cell differentiation // inferred from mutant phenotype /// 0051593 // response to folic acid // inferred from electronic annotation /// 0051835 // positive regulation of synapse structural plasticity // inferred from mutant phenotype /// 0060999 // positive regulation of dendritic spine development // inferred from mutant phenotype /// 0071276 // cellular response to cadmium ion // inferred from electronic annotation /// 0071902 // positive regulation of protein serine/threonine kinase activity // inferred from direct assay /// 0090305 // nucleic acid phosphodiester bond hydrolysis // traceable author statement
0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0016363 // nuclear matrix // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay
0000166 // nucleotide binding // inferred from electronic annotation /// 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity // inferred from electronic annotation /// 0004519 // endonuclease activity // traceable author statement /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from electronic annotation /// 0004683 // calmodulin-dependent protein kinase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008017 // microtubule binding // inferred from electronic annotation /// 0008534 // oxidized purine nucleobase lesion DNA N-glycosylase activity // traceable author statement /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0019104 // DNA N-glycosylase activity // inferred from electronic annotation /// 0034039 // 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity // inferred from electronic annotation
AB000449_at
AB000449
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000449, class A, 20 probes, 20 in AB000449 1091-1607, Human mRNA for VRK1, complete cds
AB000449
vaccinia related kinase 1
VRK1
7443
NM_003384 /// XM_005268041 /// XM_006720247
0000278 // mitotic cell cycle // traceable author statement /// 0006468 // protein phosphorylation // inferred from direct assay /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitotic nuclear division // inferred from electronic annotation /// 0007077 // mitotic nuclear envelope disassembly // traceable author statement /// 0007084 // mitotic nuclear envelope reassembly // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0043987 // histone H3-S10 phosphorylation // inferred from direct assay /// 0046777 // protein autophosphorylation // inferred from direct assay /// 0051301 // cell division // inferred from electronic annotation /// 0072355 // histone H3-T3 phosphorylation // inferred from direct assay /// 0090166 // Golgi disassembly // inferred from direct assay
0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // traceable author statement /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005795 // Golgi stack // inferred from direct assay /// 0005819 // spindle // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005856 // cytoskeleton // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0031493 // nucleosomal histone binding // inferred from physical interaction /// 0035175 // histone kinase activity (H3-S10 specific) // inferred from direct assay /// 0042802 // identical protein binding // inferred from physical interaction /// 0072354 // histone kinase activity (H3-T3 specific) // inferred from direct assay
AB000450_at
AB000450
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000450, class A, 20 probes, 20 in AB000450 1298-1730, Human mRNA for VRK2, complete cds
AB000450
vaccinia related kinase 2
VRK2
7444
NM_001130480 /// NM_001130481 /// NM_001130482 /// NM_001130483 /// NM_001288836 /// NM_001288837 /// NM_001288838 /// NM_001288839 /// NM_006296 /// XM_005264540 /// XM_005264541 /// XM_006712090 /// XM_006712091 /// XM_006712092 /// XM_006712093
0006468 // protein phosphorylation // traceable author statement /// 0008152 // metabolic process // inferred from electronic annotation /// 0016032 // viral process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0019048 // modulation by virus of host morphology or physiology // inferred from electronic annotation /// 0034599 // cellular response to oxidative stress // inferred from mutant phenotype /// 0043408 // regulation of MAPK cascade // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay /// 2000659 // regulation of interleukin-1-mediated signaling pathway // inferred from mutant phenotype
0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005789 // endoplasmic reticulum membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from direct assay
0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation
AB000460_at
AB000460
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000460, class A, 20 probes, 20 in AB000460 4262-4724, Human mRNA, clone RES4-22B, complete cds
AB000460
family with sequence similarity 193, member A
FAM193A
8603
NM_001256666 /// NM_001256667 /// NM_001256668 /// NM_003704 /// NR_046335 /// NR_046336 /// XM_006713930 /// XM_006713931 /// XM_006713932
0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay
AB000462_at
AB000462
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000462, class A, 20 probes, 20 in AB000462 6801-7227, Human mRNA for SH3 binding protein, clone RES4-23A, complete cds
AB000462
SH3-domain binding protein 2
SH3BP2
6452
NM_001122681 /// NM_001145855 /// NM_001145856 /// NM_003023 /// XM_005247997 /// XM_005247998 /// XM_005247999 /// XM_005248000 /// XM_006713911 /// XM_006713912 /// XM_006713913
0007165 // signal transduction // traceable author statement /// 0009967 // positive regulation of signal transduction // traceable author statement
0005070 // SH3/SH2 adaptor activity // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005543 // phospholipid binding // inferred from electronic annotation /// 0017124 // SH3 domain binding // inferred from electronic annotation
AB000464_at
AB000464
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000464, class A, 20 probes, 20 in AB000464 3281-3743, Human mRNA, clone RES4-24A, exon 1, 2, 3, 4
AB000464
NOP14 antisense RNA 1
NOP14-AS1
317648
NR_015453
AB000466_at
AB000466
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000466, class A, 20 probes, 20 in AB000466 2465-2963, Human mRNA, clone RES4-24C, exon 1, 2, 3
AB000466
NOP14 antisense RNA 1
NOP14-AS1
317648
NR_015453
AB000467_at
AB000467
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000467, class A, 20 probes, 20 in AB000467 1590-2118, Human mRNA, clone RES4-25, partial cds
AB000467
NOP14 nucleolar protein
NOP14
8602
NM_001291978 /// NM_001291979 /// NM_003703 /// XM_006713929 /// XR_241655
0000447 // endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000462 // maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000472 // endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0000480 // endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) // inferred from sequence or structural similarity /// 0006364 // rRNA processing // inferred from sequence or structural similarity /// 0042254 // ribosome biogenesis // inferred from electronic annotation /// 0042274 // ribosomal small subunit biogenesis // inferred from sequence or structural similarity
0005634 // nucleus // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from direct assay /// 0030686 // 90S preribosome // inferred from sequence or structural similarity /// 0030692 // Noc4p-Nop14p complex // inferred from sequence or structural similarity /// 0032040 // small-subunit processome // inferred from sequence or structural similarity
0019899 // enzyme binding // inferred from physical interaction /// 0030515 // snoRNA binding // inferred from sequence or structural similarity /// 0044822 // poly(A) RNA binding // inferred from direct assay
AB000468_at
AB000468
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000468, class A, 20 probes, 20 in AB000468 2302-2860, Human mRNA for zinc finger protein, clone RES4-26, complete cds
AB000468
ring finger protein 4
RNF4
6047
NM_001185009 /// NM_001185010 /// NM_002938
0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030521 // androgen receptor signaling pathway // non-traceable author statement /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0046685 // response to arsenic-containing substance // inferred from direct assay /// 0051865 // protein autoubiquitination // inferred from sequence or structural similarity /// 0070534 // protein K63-linked ubiquitination // inferred from sequence or structural similarity /// 0070936 // protein K48-linked ubiquitination // inferred from sequence or structural similarity /// 0070979 // protein K11-linked ubiquitination // inferred from sequence or structural similarity /// 0085020 // protein K6-linked ubiquitination // inferred from sequence or structural similarity /// 0090169 // regulation of spindle assembly // inferred from mutant phenotype /// 0090234 // regulation of kinetochore assembly // inferred from mutant phenotype
0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 0015630 // microtubule cytoskeleton // inferred from direct assay /// 0016605 // PML body // inferred from direct assay
0003677 // DNA binding // inferred from sequence or structural similarity /// 0003700 // sequence-specific DNA binding transcription factor activity // traceable author statement /// 0003713 // transcription coactivator activity // non-traceable author statement /// 0004842 // ubiquitin-protein transferase activity // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0030331 // estrogen receptor binding // inferred from electronic annotation /// 0031491 // nucleosome binding // inferred from sequence or structural similarity /// 0032184 // SUMO polymer binding // inferred from sequence or structural similarity /// 0033142 // progesterone receptor binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050681 // androgen receptor binding // non-traceable author statement
AB000584_at
AB000584
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000584, class A, 20 probes, 20 in AB000584 618-1032, Human mRNA for TGF-beta superfamily protein, complete cds
AB000584
growth differentiation factor 15
GDF15
9518
NM_004864
0007165 // signal transduction // traceable author statement /// 0007179 // transforming growth factor beta receptor signaling pathway // traceable author statement /// 0007267 // cell-cell signaling // traceable author statement
0005576 // extracellular region // traceable author statement /// 0005615 // extracellular space // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay
0005125 // cytokine activity // inferred from electronic annotation /// 0008083 // growth factor activity // inferred from electronic annotation
AB000816_s_at
AB000816
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000816, class A, 20 probes, 20 in AB000816 783-1357, Human mRNA for BMAL1d, partial cds. /gb=AB000816 /ntype=RNA
AB000816
aryl hydrocarbon receptor nuclear translocator-like
ARNTL
406
NM_001030272 /// NM_001030273 /// NM_001178 /// XM_005252928 /// XM_005252929 /// XM_005252930 /// XM_006718233 /// XM_006718234 /// XM_006718235
0000060 // protein import into nucleus, translocation // inferred from electronic annotation /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0006366 // transcription from RNA polymerase II promoter // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0007165 // signal transduction // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from sequence or structural similarity /// 0007623 // circadian rhythm // traceable author statement /// 0032007 // negative regulation of TOR signaling // inferred from sequence or structural similarity /// 0032922 // circadian regulation of gene expression // inferred from direct assay /// 0032922 // circadian regulation of gene expression // inferred from sequence or structural similarity /// 0042176 // regulation of protein catabolic process // inferred from electronic annotation /// 0042634 // regulation of hair cycle // inferred from mutant phenotype /// 0042753 // positive regulation of circadian rhythm // inferred from sequence or structural similarity /// 0043161 // proteasome-mediated ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0045599 // negative regulation of fat cell differentiation // inferred from sequence or structural similarity /// 0045892 // negative regulation of transcription, DNA-templated // inferred from sequence or structural similarity /// 0045893 // positive regulation of transcription, DNA-templated // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0048511 // rhythmic process // inferred from electronic annotation /// 0050767 // regulation of neurogenesis // inferred from sequence or structural similarity /// 0050796 // regulation of insulin secretion // inferred from sequence or structural similarity /// 0051726 // regulation of cell cycle // inferred from sequence or structural similarity /// 0051775 // response to redox state // inferred from direct assay /// 0090263 // positive regulation of canonical Wnt signaling pathway // inferred from sequence or structural similarity /// 0090403 // oxidative stress-induced premature senescence // inferred from sequence or structural similarity /// 2000074 // regulation of type B pancreatic cell development // inferred from sequence or structural similarity /// 2000323 // negative regulation of glucocorticoid receptor signaling pathway // inferred from sequence or structural similarity /// 2000772 // regulation of cellular senescence // inferred from sequence or structural similarity /// 2001016 // positive regulation of skeletal muscle cell differentiation // inferred from sequence or structural similarity
0005634 // nucleus // inferred from direct assay /// 0005667 // transcription factor complex // inferred from physical interaction /// 0005737 // cytoplasm // inferred from electronic annotation /// 0016604 // nuclear body // inferred from electronic annotation /// 0016605 // PML body // inferred from electronic annotation /// 0033391 // chromatoid body // inferred from sequence or structural similarity
0000976 // transcription regulatory region sequence-specific DNA binding // inferred from sequence or structural similarity /// 0000982 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// 0001047 // core promoter binding // inferred from sequence or structural similarity /// 0001190 // RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from genetic interaction /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0004871 // signal transducer activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0017162 // aryl hydrocarbon receptor binding // inferred from physical interaction /// 0043425 // bHLH transcription factor binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from electronic annotation /// 0046983 // protein dimerization activity // inferred from electronic annotation /// 0051879 // Hsp90 protein binding // inferred from direct assay /// 0070888 // E-box binding // inferred from direct assay
AB000895_at
AB000895
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000895, class A, 20 probes, 20 in AB000895 25-385, Homo sapiens mRNA for cadherin FIB1, partial cds. /gb=AB000895 /ntype=RNA
AB000895
dachsous cadherin-related 1
DCHS1
8642
NM_003737 /// NM_024542 /// XM_005253207
0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007157 // heterophilic cell-cell adhesion // inferred from sequence or structural similarity /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement /// 0022008 // neurogenesis // inferred from sequence or structural similarity /// 0035329 // hippo signaling // inferred from sequence or structural similarity
0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation
0005509 // calcium ion binding // inferred from electronic annotation
AB000896_at
AB000896
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000896, class A, 20 probes, 20 in AB000896 49-391, Homo sapiens mRNA for cadherin FIB2, partial cds. /gb=AB000896 /ntype=RNA
AB000896
protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5
PCDHGB4 /// PCDHGB5
8641 56101
NM_003736 /// NM_018925 /// NM_032098 /// NM_032099
0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement
0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay
0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay
AB000897_at
AB000897
Homo sapiens
Oct 6, 2014
Exemplar sequence
GenBank
AB000897, class A, 20 probes, 20 in AB000897 43-373, Homo sapiens mRNA for cadherin FIB3, partial cds. /gb=AB000897 /ntype=RNA
AB000897
protocadherin gamma subfamily A, 12
PCDHGA12
26025
NM_003735 /// NM_032094
0007155 // cell adhesion // inferred from electronic annotation /// 0007155 // cell adhesion // traceable author statement /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016339 // calcium-dependent cell-cell adhesion // non-traceable author statement
0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016020 // membrane // non-traceable author statement /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // inferred from direct assay
0005509 // calcium ion binding // inferred from electronic annotation /// 0044822 // poly(A) RNA binding // inferred from direct assay
Total number of rows: 7129 Table truncated, full table size 15876 Kbytes .
Supplementary data files not provided