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Status
Public on Jun 12, 2007
Title
Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [MBNI v6 Entrez Gene ID CDF]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see the Affymetrix website
Description
This array is identical to GPL570 but the data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used.
Submission date
Feb 13, 2007
Last update date
Jan 17, 2013
Contact name
Karl Dykema
Organization name
Van Andel Institute
Lab
Lab of Computational Biology
Street address
333 Bostwick Ave. NE
City
Grand Rapids
State/province
MI
ZIP/Postal code
49503
Country
USA
Samples (89)
GSM162148 , GSM162149 , GSM162150 , GSM162151 , GSM162152 , GSM162153
GSM162154 ,
GSM162155 ,
GSM162156 ,
GSM162157 ,
GSM162158 ,
GSM162159 ,
GSM162160 ,
GSM162161 ,
GSM162162 ,
GSM162163 ,
GSM162164 ,
GSM162165 ,
GSM162166 ,
GSM162167 ,
GSM162168 ,
GSM162169 ,
GSM162170 ,
GSM162171 ,
GSM162172 ,
GSM162173 ,
GSM162174 ,
GSM162175 ,
GSM162176 ,
GSM162177 ,
GSM162178 ,
GSM162179 ,
GSM162180 ,
GSM162181 ,
GSM162182 ,
GSM162183 ,
GSM162184 ,
GSM162185 ,
GSM162186 ,
GSM162187 ,
GSM162188 ,
GSM162189 ,
GSM162190 ,
GSM162191 ,
GSM162192 ,
GSM162193 ,
GSM162194 ,
GSM205350 ,
GSM205351 ,
GSM205352 ,
GSM205353 ,
GSM205354 ,
GSM205355 ,
GSM205356 ,
GSM205357 ,
GSM205358 ,
GSM205359 ,
GSM213126 ,
GSM213127 ,
GSM213128 ,
GSM213129 ,
GSM213130 ,
GSM213131 ,
GSM213132 ,
GSM213133 ,
GSM213134 ,
GSM213135 ,
GSM368639 ,
GSM368640 ,
GSM368641 ,
GSM368642 ,
GSM368643 ,
GSM368644 ,
GSM368645 ,
GSM368646 ,
GSM368647 ,
GSM368648 ,
GSM368649 ,
GSM368650 ,
GSM368651 ,
GSM368652 ,
GSM368653 ,
GSM368654 ,
GSM368655 ,
GSM368656 ,
GSM368657 ,
GSM368658 ,
GSM368659 ,
GSM368660 Series (3)
GSE7023 Renal Cell Carcinoma - Papillary types 1, and 2b, Normal Kidney Tissue
GSE8271 Chromophobe and Oncocytoma Renal Cell Carcinomas: gene expression and SNP analysis
GSE14762 Renal Cell Carcinoma: Hypoxia and Endocytosis
Relations Alternative to
GPL570 (Alternative CDF [official])
Data table header descriptions ID Entrez Gene ID
Symbol gene symbol
Band chr. band
Description gene description
Start.Position start nt position
Chromosome.Name chromosome number
ORF Entrez Gene ID
Data table ID Symbol Band Description Start.Position Chromosome.Name ORF 1 1 2 A2M
12p13.3-p12.3
alpha-2-macroglobulin
9111576
12
2 9 NAT1
8p23.1-p21.3
N-acetyltransferase 1 (arylamine N-acetyltransferase)
18111894
8
9 10 NAT2
8p22
N-acetyltransferase 2 (arylamine N-acetyltransferase)
18293034
8
10 12 SERPINA3
14q32.1
serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
94150523
14
12 13 AADAC
3q21.3-q25.2
arylacetamide deacetylase (esterase)
153014563
3
13 14 AAMP
2q35
angio-associated, migratory cell protein
218954357
2
14 15 AANAT
17q25
arylalkylamine N-acetyltransferase
71975245
17
15 16 AARS
16q22
alanyl-tRNA synthetase
68843797
16
16 18 ABAT
16p13.2
4-aminobutyrate aminotransferase
8675945
16
18 19 ABCA1
9q31.1
ATP-binding cassette, sub-family A (ABC1), member 1
104622837
9
19 20 ABCA2
9q34
ATP-binding cassette, sub-family A (ABC1), member 2
137177522
9
20 21 ABCA3
16p13.3
ATP-binding cassette, sub-family A (ABC1), member 3
2265882
16
21 22 ABCB7
Xq12-q13
ATP-binding cassette, sub-family B (MDR/TAP), member 7
74056127
X
22 23 ABCF1
6p21.33
ATP-binding cassette, sub-family F (GCN20), member 1
30647148
6
23 24 ABCA4
1p22.1-p21
ATP-binding cassette, sub-family A (ABC1), member 4
94170413
1
24 25 ABL1
9q34.1
v-abl Abelson murine leukemia viral oncogene homolog 1
130619260
9
25 26 ABP1
7q34-q36
amiloride binding protein 1 (amine oxidase (copper-containing))
149987239
7
26 27 ABL2
1q24-q25
v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
175808413
1
27 28 ABO
9q34.1-q34.2
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
133160606
9
28
17232 1259 Kbytes .Supplementary data files not provided
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