GEO help: Mouse over screen elements for information.
Status
Public on Dec 09, 2005
Title
Human Unigene3.1 cDNA Array 37.5K v1.0
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
Gene expression profiling group, Division of Molecular Genome Analysis, DKFZ Heidelberg
Manufacture protocol
The microarrays carried 37,530 human cDNA clones (human UniGene Set RZPD3.1, German Resource Center for Genome Research, Berlin, Germany). DNA fragments were amplified by PCR and spotted on epoxysilane glass slides (Quantifoil, Jena, Germany) using the VersArray ChipWriter Pro System (Biorad, Munich, Germany) and SMP3 pins (Telechem, Sunnyvale, CA, USA). Spotting was performed in the division of Molecular Genome Analysis with a
Support
glass
Coating
epoxysilane
Description
The human Unigene3.1 cDNA Array represents 37530 cDNA clones provided by "Deutsches Ressourcenzentrum fuer Genomforschung (RZPD)"
Web link
http://www.dkfz.de/mga/groups.asp?siteID=93 Contributor(s)
Sultmann H , Kuner R , Buness A , Ruschhaupt M , Finis K , Stojanov M , Poustka A Submission date
Nov 07, 2005
Last update date
Jan 17, 2013
Contact name
Ruprecht Kuner
Organization name
German Cancer Research Center and National Center of Tumor Diseases
Department
Molecular Genetics
Lab
Unit Cancer Genome Research
Street address
Im Neuenheimer Feld 460
City
Heidelberg
ZIP/Postal code
69120
Country
Germany
Samples (303)
GSM82393 , GSM82394 , GSM82395 , GSM82396 , GSM82397 , GSM82398
GSM82399 ,
GSM82400 ,
GSM82401 ,
GSM82402 ,
GSM82403 ,
GSM82404 ,
GSM82405 ,
GSM82406 ,
GSM82407 ,
GSM82408 ,
GSM82409 ,
GSM82410 ,
GSM82411 ,
GSM82412 ,
GSM82413 ,
GSM82414 ,
GSM82415 ,
GSM82416 ,
GSM82417 ,
GSM82418 ,
GSM82419 ,
GSM82420 ,
GSM85404 ,
GSM85405 ,
GSM85406 ,
GSM85407 ,
GSM85408 ,
GSM85409 ,
GSM85410 ,
GSM85411 ,
GSM85412 ,
GSM85413 ,
GSM85414 ,
GSM85415 ,
GSM85416 ,
GSM85417 ,
GSM85418 ,
GSM85419 ,
GSM85420 ,
GSM85421 ,
GSM85422 ,
GSM85423 ,
GSM85424 ,
GSM85425 ,
GSM85426 ,
GSM85427 ,
GSM85428 ,
GSM85429 ,
GSM85430 ,
GSM85431 ,
GSM85432 ,
GSM85433 ,
GSM85434 ,
GSM85435 ,
GSM85436 ,
GSM85437 ,
GSM85438 ,
GSM85439 ,
GSM85440 ,
GSM85441 ,
GSM85442 ,
GSM85443 ,
GSM85444 ,
GSM85445 ,
GSM85446 ,
GSM85447 ,
GSM85448 ,
GSM85449 ,
GSM85450 ,
GSM85451 ,
GSM85452 ,
GSM85453 ,
GSM85454 ,
GSM85455 ,
GSM85456 ,
GSM85457 ,
GSM85458 ,
GSM85459 ,
GSM85460 ,
GSM85461 ,
GSM85462 ,
GSM85463 ,
GSM85464 ,
GSM85465 ,
GSM148501 ,
GSM148502 ,
GSM148503 ,
GSM148504 ,
GSM159391 ,
GSM159392 ,
GSM159393 ,
GSM159394 ,
GSM159395 ,
GSM159396 ,
GSM162808 ,
GSM162809 ,
GSM162810 ,
GSM162811 ,
GSM162812 ,
GSM162813 ,
GSM162814 ,
GSM162815 ,
GSM162816 ,
GSM162817 ,
GSM162818 ,
GSM162819 ,
GSM162820 ,
GSM162821 ,
GSM162822 ,
GSM162823 ,
GSM162824 ,
GSM162825 ,
GSM162826 ,
GSM162827 ,
GSM162828 ,
GSM162829 ,
GSM162830 ,
GSM162831 ,
GSM162832 ,
GSM162833 ,
GSM162834 ,
GSM162835 ,
GSM162836 ,
GSM162837 ,
GSM162838 ,
GSM162839 ,
GSM162840 ,
GSM162841 ,
GSM162842 ,
GSM162843 ,
GSM162844 ,
GSM162845 ,
GSM162846 ,
GSM162847 ,
GSM162848 ,
GSM162849 ,
GSM162850 ,
GSM162851 ,
GSM162852 ,
GSM162853 ,
GSM162854 ,
GSM162855 ,
GSM162856 ,
GSM162857 ,
GSM162858 ,
GSM162859 ,
GSM162860 ,
GSM162861 ,
GSM162862 ,
GSM162864 ,
GSM162865 ,
GSM162866 ,
GSM162867 ,
GSM162868 ,
GSM309238 ,
GSM309239 ,
GSM309240 ,
GSM309241 ,
GSM309242 ,
GSM309243 ,
GSM309244 ,
GSM309245 ,
GSM309246 ,
GSM309247 ,
GSM309248 ,
GSM309249 ,
GSM309250 ,
GSM309251 ,
GSM309252 ,
GSM309253 ,
GSM309254 ,
GSM309255 ,
GSM309256 ,
GSM309257 ,
GSM309258 ,
GSM309259 ,
GSM309260 ,
GSM309261 ,
GSM309262 ,
GSM309263 ,
GSM309264 ,
GSM309265 ,
GSM309266 ,
GSM309267 ,
GSM309268 ,
GSM309269 ,
GSM309270 ,
GSM309271 ,
GSM309272 ,
GSM309273 ,
GSM309274 ,
GSM309275 ,
GSM309276 ,
GSM309277 ,
GSM309278 ,
GSM309279 ,
GSM309280 ,
GSM309281 ,
GSM309282 ,
GSM309283 ,
GSM309284 ,
GSM309285 ,
GSM309286 ,
GSM309287 ,
GSM309288 ,
GSM309289 ,
GSM309290 ,
GSM309291 ,
GSM309292 ,
GSM309293 ,
GSM309294 ,
GSM309295 ,
GSM309296 ,
GSM309297 ,
GSM309298 ,
GSM309299 ,
GSM309300 ,
GSM309301 ,
GSM309302 ,
GSM309303 ,
GSM309304 ,
GSM309305 ,
GSM309306 ,
GSM309307 ,
GSM309308 ,
GSM309309 ,
GSM309310 ,
GSM309311 ,
GSM309312 ,
GSM309313 ,
GSM309314 ,
GSM309340 ,
GSM388467 ,
GSM388468 ,
GSM388469 ,
GSM388470 ,
GSM388471 ,
GSM388472 ,
GSM388473 ,
GSM388474 ,
GSM388475 ,
GSM388476 ,
GSM388477 ,
GSM388478 ,
GSM388479 ,
GSM388480 ,
GSM388481 ,
GSM388482 ,
GSM388483 ,
GSM388484 ,
GSM388485 ,
GSM388486 ,
GSM388487 ,
GSM388488 ,
GSM388489 ,
GSM388490 ,
GSM388491 ,
GSM388492 ,
GSM388493 ,
GSM388494 ,
GSM388495 ,
GSM388496 ,
GSM388497 ,
GSM388498 ,
GSM388499 ,
GSM388500 ,
GSM388501 ,
GSM388502 ,
GSM388503 ,
GSM388504 ,
GSM388505 ,
GSM388506 ,
GSM388507 ,
GSM388508 ,
GSM388509 ,
GSM388510 ,
GSM388511 ,
GSM388512 ,
GSM388513 ,
GSM388514 ,
GSM388515 ,
GSM388516 ,
GSM388517 ,
GSM388518 ,
GSM388519 ,
GSM388520 ,
GSM388521 ,
GSM388522 ,
GSM388523 ,
GSM388524 ,
GSM388525 ,
GSM388526 ,
GSM388527 ,
GSM388528 ,
GSM388529 ,
GSM388530 ,
GSM388531 Series (8)
GSE3586 Dilated Cardiomyopathy and Non Failing Septal Biopsies
GSE3698 Arthritis_RA_OA_VNS
GSE3699 DNA-Methyltransferases (DNMT) knockouts
GSE6474 miRNA let-7a-3 overexpression in lung cancer cell line A549
GSE6926 Identification of downstream targets of the human papillomavirus E6 and E7 oncoproteins by RNA interference
GSE7033 Estimating networks from RNA interference and microarray data
GSE12291 Reconstruction of gene interaction networks by in vitro RNA interference and global expression analysis
GSE15484 Prostate Cancer Gleason Score
Data table header descriptions ID RZPD ID
PLATE_ID Plate identifier
ROW_ID Row within plate
COLUMN_ID Column within plate
GB_LIST GenBank or RefSeq accession
CLONE_ID IMAGE ID
SPOT_ID RZPD_LIB_983_ID alternative RZPD clone ID
VECTOR cloning vector
ANTIBIOTIC_RESISTENCE E.coli growth medium restistence
PCR_PRIMER cDNA insert amplification primer
RESTRICTION_ENZYMES enzymes for cDNA insert restriction sites
GENEBANK_ACC Genebank Ids annotated by the clone provider RZPD Berlin May 2005
GENE_SYMBOL Gene symbol from Unigene Cluster annotated by the clone provider RZPD Berlin May 2005
GENE_DESCRIPTION Gene description annotated by the clone provider RZPD Berlin May 2005
CHROMOSOME cytogenetic information annotated by the clone provider RZPD Berlin May 2005
UNIGENE_ID Unigene ID annotated by the clone provider RZPD Berlin May 2005
REFSEQ_ID RefSeq_ID annotated by the clone provider RZPD Berlin May 2005
ENSEMBL_ID Ensembl ID annotated by the clone provider RZPD Berlin May 2005
CLONE_QUALITY Clone quality annotated by the clone provider RZPD Berlin May 2005
order
Data table ID PLATE_ID ROW_ID COLUMN_ID GB_LIST CLONE_ID SPOT_ID RZPD_LIB_983_ID VECTOR ANTIBIOTIC_RESISTENCE PCR_PRIMER RESTRICTION_ENZYMES GENEBANK_ACC GENE_SYMBOL GENE_DESCRIPTION CHROMOSOME UNIGENE_ID REFSEQ_ID ENSEMBL_ID CLONE_QUALITY order IMAGp998A1188
1
A
1
NM_182639 NM_182638 NM_182637 NM_000195 IMAGE:111634
HU3_p983A011D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T90991,T84567,BX096968
HPS1
Hermansky-Pudlak syndrome 1
10:q23.1-q23.3
Hs.404568
NM_182639,NM_182638,NM_182637,NM_000195
ENSG00000107521
+
1
IMAGp998H1180
1
A
2
T72745 T72671 BX092862 IMAGE:108730
HU3_p983A012D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T72745,T72671,BX092862
-
2
IMAGp998A0786
1
A
3
T90271 T82849 BX097001 AF339765 IMAGE:110862
HU3_p983A021D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T90271,T82849,BX097001,AF339765
Clone IMAGE:110862, mRNA sequence
13
Hs.225914
o
3
IMAGp998C0318
1
A
4
T66870 T66869 BX092893 IMAGE:66362
HU3_p983A022D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66870,T66869,BX092893
Transcribed locus, moderately similar to XP_509882.1 LOC452831 [Pan troglodytes]
18
Hs.263209
o
4
IMAGp998A0785
1
A
5
T82802 T89979 BX097039 IMAGE:110478
HU3_p983A031D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T82802,T89979,BX097039
Transcribed locus
1
Hs.187420
o
5
IMAGp998A0618
1
A
6
NM_005319 IMAGE:66317
HU3_p983A032D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66816,T66815,BX092939
HIST1H1C
Histone 1, H1c
6:p21.3
Hs.7644
NM_005319
ENSG00000187837
++
6
IMAGp998F1684
1
A
7
NM_000108 IMAGE:110223
HU3_p983A041D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T71416,T71280,BX097058
DLD
Dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex)
7:q31-q32
Hs.131711
NM_000108
ENSG00000091140
++
7
IMAGp998A0518
1
A
8
T66795 T66794 BX092976 IMAGE:66316
HU3_p983A042D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66795,T66794,BX092976
-
8
IMAGp998A0784
1
A
9
XM_496780 IMAGE:110094
HU3_p983A051D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T81624,T71133,BX097092
FLJ38109
Hypothetical protein FLJ38109
5:q33.2
Hs.551597
XM_496780
+
9
IMAGp998A1018
1
A
10
NM_005643 IMAGE:66321
HU3_p983A052D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66818,T66817,BX093017
TAF11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
6:p21.31
Hs.112444
NM_005643
ENSG00000064995
+
10
IMAGp998B1885
1
A
11
NM_018559 IMAGE:110513
HU3_p983A061D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T90181,T82990,BX097960
KIAA1704
KIAA1704
13:q13-q14
Hs.507922
NM_018559
ENSG00000133114
o
11
IMAGp998G1681
1
A
12
T80716 BX093941 IMAGE:109095
HU3_p983A062D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T80716,BX093941
Transcribed locus
14
Hs.161790
++
12
IMAGp998D1383
1
A
13
NM_006598 IMAGE:109788
HU3_p983A071D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T82115,T81795,BX097989
SLC12A7
Solute carrier family 12 (potassium/chloride transporters), member 7
5:p15
Hs.172613
NM_006598
ENSG00000113504
++
13
IMAGp998B1418
1
A
14
NM_018490 IMAGE:66349
HU3_p983A072D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66858,T66857,BX093974
LGR4
Leucine-rich repeat-containing G protein-coupled receptor 4
11:p14-p13
Hs.502176
NM_018490
+
14
IMAGp998H2081
1
A
15
NM_207400 IMAGE:109123
HU3_p983A081D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T80979,T80978,BX098029
FLJ39739
FLJ39739 protein,Transcribed locus
1:q21.1,1
Hs.406990, Hs.487721
NM_207400
ENSG00000178669
+
15
IMAGp998C1818
1
A
16
NM_002809 IMAGE:66377
HU3_p983A082D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66907,T66906,BX093997
PSMD3
Proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
17:q21.1
Hs.12970
NM_002809
ENSG00000108344
o
16
IMAGp998J2084
1
A
17
NM_006654 IMAGE:110323
HU3_p983A091D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T82029,T71575,BX098070
FRS2
Fibroblast growth factor receptor substrate 2
12:q15
Hs.334831
NM_006654
ENSG00000166225
+
17
IMAGp998A1918
1
A
18
T66806 T66805 BX094022 IMAGE:66330
HU3_p983A092D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66806,T66805,BX094022
-
18
IMAGp998A2081
1
A
19
NM_014270 IMAGE:108955
HU3_p983A101D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T80665,BX098139
SLC7A9
Solute carrier family 7 (cationic amino acid transporter, y+ system), member 9
19:q13.1
Hs.408567
NM_014270
ENSG00000021488
++
19
IMAGp998A1618
1
A
20
XM_114735 IMAGE:66327
HU3_p983A102D
pT7T3D-PacI
ampicillin
RZPD M13 forward/reverse
EcoRI,NotI
T66824,T66823,BX094042
CR1L
Complement component (3b/4b) receptor 1-like
1:q32.1
Hs.149414
XM_114735
ENSG00000197721
++
20
37530 8773 Kbytes .Supplementary data files not provided
Less...
More...