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Platform GPL22448 Query DataSets for GPL22448
Status Public on Sep 20, 2016
Title Phalanx Human lncRNA OneArray v1_mRNA
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Phalanx Biotech Group
Manufacture protocol See http://www.phalanxbiotech.com/ for updated protocols
 
Description GRCh38
 
Submission date Sep 19, 2016
Last update date Aug 07, 2018
Contact name Rachel Huang
E-mail(s) rachel98445111@gmail.com
Organization name Phalanx Biotech Group
Street address 6F., No.6, Keji 5th Rd., East Dist.
City Hsinchu City
ZIP/Postal code 300
Country Taiwan
 
Samples (52) GSM2527022, GSM2527023, GSM2527024, GSM2527025, GSM2527026, GSM2527027 
Series (6)
GSE95849 Transcriptional profiling of diabetic peripheral neuropathy patients, diabetic patients, and healthy participants
GSE96755 Gene expression by basic transcription factor 3 (BTF3ļ¼‰knocked out in HCT116
GSE104267 Predictive analysis of long non-coding RNA expression profiles in tumor and normal tissues from glioblastoma patients
Relations
Alternative to GPL22449 (lncRNA)

Data table header descriptions
ID
Phalanx_id Probe names were used in HlncOA array
Transcript_type coding or none-coding transcripts
Gene_symbol Gene symbols or gene names
Description Description of gene
Group All probes were classified into four groups to present sigle or multiple targets. Group 1 - single trnascript hit; Group 4 - multiple transcript hits; Group 5 - no any hit; Group 7 - Conserved probe(s) from previous array version.
ORF ORF Name
REFSEQ RefSeq id
RNA_nucleotide_gi A series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Accession number of the sequence record.
Protein_accession.version The accession number of NCBI record followed by a dot and a version numberĀ .
Ensembl_gene Gene id of Ensembl
Ensembl_transcript Transcript id of Ensembl
Ensembl_protein Protein id of Ensembl
SPOT_ID

Data table
ID Phalanx_id Transcript_type Gene_symbol Description Group ORF REFSEQ RNA_nucleotide_gi Protein_accession.version Ensembl_gene Ensembl_transcript Ensembl_protein SPOT_ID
PH_hs_0000002 PH_hs_0000002 Coding CEACAM4 carcinoembryonic antigen-related cell adhesion molecule 4 1 1089 NM_001817.2 71143131 NP_001808.2 ENSG00000105352 ENST00000600925,ENST00000221954 ENSP00000473018,ENSP00000221954
PH_hs_0000003 PH_hs_0000003 Coding LTA lymphotoxin alpha (TNF superfamily, member 1) 1 4049 NM_000595.3,NM_001159740.2 393715055;393715054 NP_000586.2,NP_001153212.1 ENSG00000238130|ENSG00000173503|ENSG00000226275|ENSG00000230279|ENSG00000231408|ENSG00000226979|ENSG00000223919 ENST00000383304,ENST00000383303|ENST00000383499,ENST00000400272|ENST00000448630,ENST00000456789|ENST00000412851,ENST00000426845|ENST00000454550,ENST00000436519|ENST00000418386,ENST00000454783|ENST00000441939,ENST00000432632 ENSP00000372793,ENSP00000372791|ENSP00000372991,ENSP00000383131|ENSP00000407133,ENSP00000395895|ENSP00000412555,ENSP00000402413|ENSP00000416509,ENSP00000395976|ENSP00000413450,ENSP00000403495|ENSP00000387924,ENSP00000416337
PH_hs_0000004 PH_hs_0000004 Coding ACAT1 acetyl-CoA acetyltransferase 1 1 38 NM_000019.3 223890189 NP_000010.1 ENSG00000075239 ENST00000265838 ENSP00000265838
PH_hs_0000005 PH_hs_0000005 Coding PTN pleiotrophin 1 5764 NM_002825.5 42476152 NP_002816.1 ENSG00000105894 ENST00000393083,ENST00000348225 ENSP00000376798,ENSP00000341170
PH_hs_0000006 PH_hs_0000006 Coding PTAFR platelet-activating factor receptor 1 5724 NM_001164723.2,NM_001164722.2,NM_001164721.1,NM_000952.4 344030231;344030229;257900487;257900489 NP_001158195.1,NP_001158194.1,NP_001158193.1,NP_000943.1
PH_hs_0000007 PH_hs_0000007 Coding,Non-coding, PIGA phosphatidylinositol glycan anchor biosynthesis, class A 1 5277 NM_002641.3,NR_033836.1,NR_033835.1,NM_020473.3 299782542;299782547;299782544;299782545 NP_002632.1,-,NP_065206.3 ENSG00000165195 ENST00000428964,ENST00000542278,ENST00000333590 ENSP00000416102,ENSP00000442653,ENSP00000369820
PH_hs_0000008 PH_hs_0000008 Coding PRPS1 phosphoribosyl pyrophosphate synthetase 1 1 5631 NM_001204402.1,NM_002764.3 324711014;164663865 NP_001191331.1,NP_002755.1 ENSG00000147224 ENST00000372435 ENSP00000361512
PH_hs_0000009 PH_hs_0000009 Coding PTPN12 protein tyrosine phosphatase, non-receptor type 12 1 5782 NM_001131009.1,NM_001131008.1,NM_002835.3 196114969;196114966;196114950 NP_001124481.1,NP_001124480.1,NP_002826.3 ENSG00000127947 ENST00000435495,ENST00000248594 ENSP00000397991,ENSP00000248594
PH_hs_0000010 PH_hs_0000010 Coding SDHB succinate dehydrogenase complex, subunit B, iron sulfur (Ip) 1 6390 NM_003000.2 115387093 NP_002991.2 ENSG00000117118 ENST00000375499 ENSP00000364649
PH_hs_0000011 PH_hs_0000011 Coding IL1RL1 interleukin 1 receptor-like 1 1 9173 NM_003856.2 27894327 NP_003847.2 ENSG00000115602 ENST00000409584 ENSP00000386618
PH_hs_0000012 PH_hs_0000012 Coding IL2RG interleukin 2 receptor, gamma 1 3561 NM_000206.2 291045209 NP_000197.1 ENSG00000147168 ENST00000374202 ENSP00000363318
PH_hs_0000013 PH_hs_0000013 Coding RBL1 retinoblastoma-like 1 (p107) 1 5933 NM_002895.2 34577078 NP_002886.2
PH_hs_0000014 PH_hs_0000014 Coding,Non-coding, AMT aminomethyltransferase 1 275 NM_001164712.1,NM_001164711.1,NM_001164710.1,NM_000481.3,NR_028435.1 257796257;257796255;257796253;257796252;257796259 NP_001158184.1,NP_001158183.1,NP_001158182.1,NP_000472.2,- ENSG00000145020 ENST00000538581,ENST00000395338,ENST00000273588,ENST00000458307,ENST00000427987 ENSP00000443200,ENSP00000378747,ENSP00000273588,ENSP00000415619,ENSP00000403821
PH_hs_0000015 PH_hs_0000015 Coding HGFAC HGF activator 1 3083 NM_001528.2 32455241 NP_001519.1 ENSG00000109758 ENST00000511533,ENST00000382774 ENSP00000421801,ENSP00000372224
PH_hs_0000016 PH_hs_0000016 Coding FGL1 fibrinogen-like 1 1 2267 NM_201553.1,NM_201552.1,NM_147203.2,NM_004467.3 42544201;42544199;42544197;42544188 NP_963847.1,NP_963846.1,NP_671736.2,NP_004458.3 ENSG00000104760 ENST00000381840,ENST00000398054,ENST00000427924,ENST00000381841,ENST00000518650,ENST00000522444,ENST00000521427,ENST00000398056,ENST00000221204 ENSP00000371262,ENSP00000381131,ENSP00000401952,ENSP00000371263,ENSP00000428430,ENSP00000429757,ENSP00000428932,ENSP00000381133,ENSP00000221204
PH_hs_0000017 PH_hs_0000017 Coding DPEP1 dipeptidase 1 (renal) 1 1800 NM_001128141.2,NM_004413.3 373938465;189458883 NP_001121613.1,NP_004404.1 ENSG00000015413 ENST00000421184,ENST00000261615,ENST00000393092 ENSP00000397313,ENSP00000261615,ENSP00000376807
PH_hs_0000018 PH_hs_0000018 Coding PREPL prolyl endopeptidase-like 1 9581 NM_001171617.1,NM_001171613.1,NM_001171606.1,NM_001171603.1,NM_001042386.2,NM_001042385.2,NM_006036.4 284172437;284172430;284172419;284172412;284172364;284172363;284172362 NP_001165088.1,NP_001165084.1,NP_001165077.1,NP_001165074.1,NP_001035845.1,NP_001035844.1,NP_006027.2 ENSG00000138078 ENST00000409936,ENST00000409957,ENST00000409411 ENSP00000386543,ENSP00000387241,ENSP00000387095
PH_hs_0000019 PH_hs_0000019 Coding FGF9 fibroblast growth factor 9 (glia-activating factor) 1 2254 NM_002010.2 209529671 NP_002001.1
PH_hs_0000021 PH_hs_0000021 Coding CCKAR cholecystokinin A receptor 1 886 NM_000730.2 63054823 NP_000721.1 ENSG00000163394 ENST00000295589 ENSP00000295589
PH_hs_0000022 PH_hs_0000022 Coding CREB5 cAMP responsive element binding protein 5 1 9586 NM_001011666.1,NM_004904.2,NM_182899.3,NM_182898.2 59938775;59938773;59938771;59938769 NP_001011666.1,NP_004895.2,NP_878902.2,NP_878901.2 ENSG00000146592 ENST00000396298,ENST00000396300,ENST00000396299 ENSP00000379592,ENSP00000379594,ENSP00000379593

Total number of rows: 31741

Table truncated, full table size 7170 Kbytes.




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