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Status
Public on Sep 20, 2016
Title
Phalanx Human lncRNA OneArray v1_lncRNA
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Phalanx Biotech Inc
Manufacture protocol
See http://www.phalanxbiotech.com/ for updated protocols
Description
GRCh38
Submission date
Sep 19, 2016
Last update date
Sep 20, 2016
Contact name
Rachel Huang
E-mail(s)
rachel98445111@gmail.com Organization name
Phalanx Biotech Group
Street address
6F., No.6, Keji 5th Rd., East Dist.
City
Hsinchu City
ZIP/Postal code
300
Country
Taiwan
Samples (12)
GSM2793877 , GSM2793878 , GSM2793879 , GSM2793880 , GSM2793881 , GSM2793882
Series (1)
GSE104267 Predictive analysis of long non-coding RNA expression profiles in tumor and normal tissues from glioblastoma patients
Relations Alternative to
GPL22448 (mRNA)
Data table header descriptions ID Probe_id
Probe_id Probe names were used in HlncOA array
Probe_group All probes were classified into four groups to present sigle or multiple targets. Group 1 - single trnascript hit; Group 4 - multiple transcript hits; Group 5 - no any hit; Group 7 - Conserved probe(s) from previous array version.
Source Sources of major designed targets were used in this file. Two major target sources were used for probe design, Gencode and RefSeq.
Transcript_id The target transcript id(s)
Transcript_biotype Total biotypes were used in this annotation file according to http://www.gencodegenes.org/gencode_biotypes.html.
Gene_id Gene name(s) of target transcripts.
Entrez_gene Entrez Gene (www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene), gene-specific information.
ORF ORF Name
SPOT_ID Gene_symbol Gene symbols or gene names
Chr Chromosme name(s) (number(s)) of gene(s) of target transcript(s)
RANGE_STRAND The directions of transcripts. "+", positive strand (5' to 3'); "-", negative strand (3' to 5')
RANGE_START start site of gene locaion of target gene
RANGE_STOP end site of gene location of target gene
Other_accession Accession to access RefSeq or Ensembl databases
Noncode_transcript_id Nocode transcript id v4
Noncode_gene_id Nocode gene id v4
Data table ID Probe_id Probe_group Source Transcript_id Transcript_biotype Gene_id Entrez_gene ORF SPOT_ID Gene_symbol Chr RANGE_STRAND RANGE_START RANGE_STOP Other_accession Noncode_transcript_id Noncode_gene_id PH_lnc_0000001
PH_lnc_0000001
1
GENCODE
ENST00000222396
antisense
ENSG00000226472
-
ENST00000222396
RP11-551L14.4
12
-
30978308
31006010
-
NONHSAT027526
NONHSAG010796
PH_lnc_0000002
PH_lnc_0000002
1
GENCODE
ENST00000230113
lincRNA
ENSG00000235200
-
ENST00000230113
RP4-763G1.2
1
+
67522347
67532612
-
NONHSAT003798
NONHSAG001758
PH_lnc_0000003
PH_lnc_0000003
1
GENCODE
ENST00000244820
antisense
ENSG00000124835
93463
93463 AC105760.3
2
-
237048599
237056167
-
-
-
PH_lnc_0000004
PH_lnc_0000004
1
GENCODE
ENST00000244906
lincRNA
ENSG00000124915
26070
26070 DKFZP434K028
11
-
61746493
61757655
NR_026882
NONHSAT021702
NONHSAG008487
PH_lnc_0000005
PH_lnc_0000005
1
GENCODE
ENST00000253470
lincRNA
ENSG00000180910
83866
83866 TTTY11
Y
-
8783310
8817382
NR_001548
NONHSAT139397
NONHSAG055723
PH_lnc_0000006
PH_lnc_0000006
1
GENCODE
ENST00000262354
lincRNA
ENSG00000228592
266917
266917 D21S2088E
21
-
23361104
23384861
NR_040254
NONHSAT081422
NONHSAG032525
PH_lnc_0000007
PH_lnc_0000007
1
GENCODE
ENST00000289890
antisense
ENSG00000226438
-
ENST00000289890
RP11-420K8.1
1
-
39249838
39257649
-
NONHSAT002547
NONHSAG001112
PH_lnc_0000008
PH_lnc_0000008
1
GENCODE
ENST00000291374
lincRNA
ENSG00000214039
-
ENST00000291374
RP11-474D1.3
12
-
130033454
130045057
-
NONHSAT031945
NONHSAG012741
PH_lnc_0000009
PH_lnc_0000009
1
GENCODE
ENST00000295052
lincRNA
ENSG00000162947
-
ENST00000295052
AC007364.1
2
-
149767506
149859191
-
NONHSAT074911
NONHSAG029519
PH_lnc_0000010
PH_lnc_0000010
1
GENCODE
ENST00000295549
lincRNA
ENSG00000163364
-
ENST00000295549
LINC01116
2
-
176629589
176637931
-
NONHSAT075659
NONHSAG029913
PH_lnc_0000011
PH_lnc_0000011
1
GENCODE
ENST00000297163
antisense
ENSG00000164621
9597
9597 SMAD5-AS1
5
-
136129507
136134890
NR_026763
NONHSAT103950
NONHSAG041626
PH_lnc_0000012
PH_lnc_0000012
1
GENCODE
ENST00000300167
antisense
ENSG00000166917
101927671
101927671 MIR202HG
10
-
133246478
133247891
-
NONHSAT017132
NONHSAG007246
PH_lnc_0000013
PH_lnc_0000013
1
GENCODE
ENST00000300458
retained_intron
ENSG00000167117
-
ENST00000300458
LINC00483
17
-
50761029
50767557
-
NONHSAT054719
NONHSAG022205
PH_lnc_0000014
PH_lnc_0000014
1
GENCODE
ENST00000301683
lincRNA
ENSG00000213373
-
ENST00000301683
LINC00671
17
-
42874670
42898704
-
NONHSAT053779
NONHSAG021862
PH_lnc_0000015
PH_lnc_0000015
1
GENCODE
ENST00000304233
lincRNA
ENSG00000170983
-
ENST00000304233
LINC00208
8
+
11576313
11581342
-
NONHSAT125068
NONHSAG049551
PH_lnc_0000016
PH_lnc_0000016
1
GENCODE
ENST00000304425
sense_overlapping
ENSG00000171889
-
ENST00000304425
MIR31HG
9
-
21455642
21559669
-
NONHSAT130385
NONHSAG051889
PH_lnc_0000017
PH_lnc_0000017
1
GENCODE
ENST00000304751
lincRNA
ENSG00000215241
101927905
101927905 RP11-266K4.9
12
+
8235415
8242564
NR_120455
NONHSAT026316
NONHSAG010403
PH_lnc_0000018
PH_lnc_0000018
1
GENCODE
ENST00000306533
lincRNA
ENSG00000255689
-
ENST00000306533
RP11-136I14.5
11
+
115582297
115600339
-
NONHSAT024312
NONHSAG009683
PH_lnc_0000019
PH_lnc_0000019
1
GENCODE
ENST00000307548
antisense
ENSG00000171671
220070
220070 SHANK2-AS3
11
+
70862790
70865115
NR_073536
NONHSAT022671
NONHSAG008933
PH_lnc_0000020
PH_lnc_0000020
1
GENCODE
ENST00000309874
antisense
ENSG00000174171
105370792
105370792 RP11-23P13.6
15
+
41892793
41898575
-
NONHSAT041979
NONHSAG016665
23184 4617 Kbytes .Supplementary data files not provided
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